Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0445 ATGGCATCGAAAACTTGCGCGAACGTGTCGTGCCCCGGGGCGTCGTCGGGGTCGACGATCGAGTGGAGAAAAGGTTGGGCTTTGCGATCTGGTGATTTCGCCATTCTCTGCGATAAGTGCGGGTCTGCTTTTGAGCAACTAGTTTTCTGTGACATGTTTCACTCAAAGGACTCTGGTTGGAGGAAATGTACTGCATGTGGCAAGCGTCTCCATTGTGGATGCATTGCTTCCAGGTCTCTGCTTGAGCTACTTGATAGTGGTGGCGTAAATTGTATTAACTGCATAAGAAGTTCAGGACCTCACCCTATGACAGGTGATGAAAAGGCTAATGAAAGTGGTGCAATGACAGTGGATAATGTGGGTGAAATTCGTTGCACTTCTGTGGACAATCAATTAGATGGTGGTAGTGTTGAGAAGATGAAGCTTACACAGTTGGGGAATGATACATCGGGTGATGGACTGAAAAACTTTCTTCAATCTGGAAATGACAACATAAATGGGTCTCTTGGCCAAATGAAACAGGAGGAAGTTTTGCCACCTCAGGGAGAAACTGGTAGTACATGTTTGTCAAATTTAAATCAAGCATCCATCGGATCTTCCATACATGCCAAACTAGATATTTGTAAAGCAAACATGATGGTCAAAGATATACATGAGTCTCTGGTTCAGACAAATTTGAGTATCACCTTGGGTGCTCCTTCAGGAAATCCAAATGTGTTTCCTAGTGCAGTCGTTGAAGAAAGGGAACAACACAAAACATCCACTCCCATCCAACAGGGGCCTAGGTCTCGCCATCTTTTGCCCAAGCCCCCAAGGTCAGCACTTTCTCCTGTTTTGGAAACAAATACAGGTATAGTTCCACAAATACGTGTTGCAAGGCCACCTGCAGAGGGACGGGGTCGGAATCAGTTGCTTCCTCGTTATTGGCCGAGGATCACAGACCAGGAATTGCAGCAAATATCTGGAGACTCAAATTCCACCATCGTACCATTATTTGAAAAGATGCTAAGTGCCAGTGATGCTGGTCGTATTGGTCGTTTAGTGCTCCCAAAAGCATGTGCTGAAGCATATTTTCCTCCTATCTCTCAACCAGAGGGCCTTCCTTTAAGGATTCAGGATGTGAAGGGGAAAGAATGGGTGTTCCAATTCAGGTTTTGGCCCAATAATAACAGCAGGATGTATGTTTTAGAGGGTGTGACCCCATGCATACAGTCAATGCAGTTACAAGCTGGAGATACTGTAACATTCAGCCGTATGGATCCAGAAGGAAAACTTGTTATGGGGTTCCGGAAAGCATCTAACTCCGTTTCCATGCAGTCGCTGAAGGGAAGCACAGATCCCCATCTAAATGCATTGTCAAAACATTTGAATTCAGCTAGTGGGGATATTGGCTGGCATAAAACAGAGAAGCATGGAGGCAAGACAAGAGAGGGCTTGCTGCTTCCATCAATGCTGGTACCAGAGAAGAAGAGAACTCGAACAATTGGGTCTAAAAGTAAGAGATTGCTAATCGATGGCCAAGATGCTCTGGAGCTGAGGCTTACATGGGAAGAGGCACAGTCTTTGCTCCGCCCACCCCCAAGTGTCAAGCCAGTCATTGACGTGATTGAGGACTACGAATTTGAGGCATACACTGAACCCCCTGTTTTTGGAAAGAGGAGTATTTTCACAACCCTCCCATCTGGGGGAGAGGAGCAATGGGTTCAGTGTGATAGTTGCTCTAAATGGCGAAAGGTGCCCCATGATTATCTTGTTCCATGTCAGTGGACGTGTGCTGAAAATTTGTGGGATCAAAGCAGGTGTTCATGTTCTGCCCCAGATGAGTTGAGCCCTAGGGAACTCGAACATATTCTCAGACAATATAAGGATTTCAGAAAACGTCGAATTGCAGCAGTTCATAGGCCTGCACAGGAGCATGAACCTTCCGGCCTAGATGCTCTGGCCAATGCTGCAGCCCTTGGAGATGACATGAGCGACCCAGCCGCTACATCAGTTGCAACCACAACCAAACACCCGAGGCATCGCCCAGGCTGCTCATGCATTGTGTGTATCCAGCCCCCCAGTGGGAAGGGCAAGCACAAGCCCACCTGCACATGCAATGTATGTATGACAGTTAAACGTCGTTTTAAAACACTAATGATGCGGAAAAAAAAGCGCCAATCAGAGCGTGAAGCAGAGATTGCCCAGATAAATCACAATATCTGGGGCGCTAAGGATGAAGCAGAAGTGGACAGCACCTCAAGACTTGCCACTCCAAATCCTGACCCTTCGGAGAGTGAAGCTGGGTTGGCAAACGAGTCAGAATCTAGGAGCCAAAGCAACAATCTGTCCACCAAGTTGAGTGAAACTGGCAAGGGAAAAATAGACTTGAATTGCCATCCTGACCGTGAGGAGGACTTGCAAGTGGGATCAAACCGAGTGAGCATGATGAGTCTTCTACAAGTGGCAAGTCTTCCTTTGGAAACATATCTGAAGCAGAATGGTCTCAAAAGCTTGGCCGAGCAACAAGGCAGCTCAGGATCACATGTGCCACCACCACAAGCTACTGGAGAGAGTGAAGGACCACTAAATGAGGATCATTGTATTACTGCTCCTGCAGTTTCAGAGCGAGAGAATGGGGGAGATGAGGAGCACTCTGGACAAGATCAAAGCAAAAATGATGCTTAA 2667 0.4698 MASKTCANVSCPGASSGSTIEWRKGWALRSGDFAILCDKCGSAFEQLVFCDMFHSKDSGWRKCTACGKRLHCGCIASRSLLELLDSGGVNCINCIRSSGPHPMTGDEKANESGAMTVDNVGEIRCTSVDNQLDGGSVEKMKLTQLGNDTSGDGLKNFLQSGNDNINGSLGQMKQEEVLPPQGETGSTCLSNLNQASIGSSIHAKLDICKANMMVKDIHESLVQTNLSITLGAPSGNPNVFPSAVVEEREQHKTSTPIQQGPRSRHLLPKPPRSALSPVLETNTGIVPQIRVARPPAEGRGRNQLLPRYWPRITDQELQQISGDSNSTIVPLFEKMLSASDAGRIGRLVLPKACAEAYFPPISQPEGLPLRIQDVKGKEWVFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRMDPEGKLVMGFRKASNSVSMQSLKGSTDPHLNALSKHLNSASGDIGWHKTEKHGGKTREGLLLPSMLVPEKKRTRTIGSKSKRLLIDGQDALELRLTWEEAQSLLRPPPSVKPVIDVIEDYEFEAYTEPPVFGKRSIFTTLPSGGEEQWVQCDSCSKWRKVPHDYLVPCQWTCAENLWDQSRCSCSAPDELSPRELEHILRQYKDFRKRRIAAVHRPAQEHEPSGLDALANAAALGDDMSDPAATSVATTTKHPRHRPGCSCIVCIQPPSGKGKHKPTCTCNVCMTVKRRFKTLMMRKKKRQSEREAEIAQINHNIWGAKDEAEVDSTSRLATPNPDPSESEAGLANESESRSQSNNLSTKLSETGKGKIDLNCHPDREEDLQVGSNRVSMMSLLQVASLPLETYLKQNGLKSLAEQQGSSGSHVPPPQATGESEGPLNEDHCITAPAVSERENGGDEEHSGQDQSKNDA* 889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0445 888 Pfam CW-type Zinc Finger 566 608 IPR011124 GO:0008270
Vvi8g0445 888 SUPERFAMILY DNA-binding pseudobarrel domain 329 431 IPR015300 -
Vvi8g0445 888 ProSiteProfiles Zinc finger CW-type profile. 561 611 IPR011124 GO:0008270
Vvi8g0445 888 CDD B3_DNA 330 431 IPR003340 GO:0003677
Vvi8g0445 888 Gene3D - 561 616 - -
Vvi8g0445 888 MobiDBLite consensus disorder prediction 738 794 - -
Vvi8g0445 888 ProSiteProfiles B3 DNA-binding domain profile. 332 433 IPR003340 GO:0003677
Vvi8g0445 888 MobiDBLite consensus disorder prediction 833 888 - -
Vvi8g0445 888 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 3 836 - -
Vvi8g0445 888 Gene3D - 310 436 IPR015300 -
Vvi8g0445 888 MobiDBLite consensus disorder prediction 746 784 - -
Vvi8g0445 888 Pfam B3 DNA binding domain 332 431 IPR003340 GO:0003677
Vvi8g0445 888 FunFam B3 domain-containing transcription repressor VAL1 310 437 - -
Vvi8g0445 888 SMART B3_2 332 433 IPR003340 GO:0003677
Vvi8g0445 888 MobiDBLite consensus disorder prediction 251 277 - -
Vvi8g0445 888 MobiDBLite consensus disorder prediction 870 888 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0445 Vvi-Chr8 10751655 10767344 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0445 4 839 B3 DNA Binding Superfamily AT4G32010 50.955 0.0 797
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vvi8g0445 B3 1.1e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0445 - - vvi:100251742 1787.7