Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0444 ATGGGCTGTTTCAAGGTTTTGAAGAGTAAGAAGAAAAAGGCTGAGCGCACTGCTTACATTAAAAGGATCAATCCTCAGGAGCTAACACCCACTACACTGCCTGAACCTAAACTTCAGAGCCGCACACTTCAATCTGCACCCCCAAGTTTTAGAACCCTAGTTAAACCTGTTCAACCAGTTAAAAGAATCATTAACAGTAGAACACGAGCATTGTCCGCCCCATCAAGCCTCAATACAACTGAACAAGATGCGCTTGCATCAAATGAATGTGAAGAACAAGAAGAGTTGAAGAGTCGTGTTGGATTAACAAAGGAACAGCGATCGCCAAACCCTCAGCCTCTTCCTCTCCCATCACCTCAAGGCACTGTTGTACTGAAAGCTACAGGAAGTTTTAAAGCAGGGAATGCGAGTGGCCCTCTCTATGCTTCTGGCCCACTGCCATTGCCTCCTTTAGGAGCACTCCGGAACTTTGGCTATGAAGAATTATCAAACGCCTGCCTCAATTTCTCTTCAGATCGATGTGTGTCGGAAGGACTTTCATCCATAATTTACAAGGCTTCCTTTGGGGATGATGCTTCAGGTTCAAAAAAGCTGGAAGCCACTGTTACCCGGCTTCACCCATCCACCCAGGGTTTAAAGGAATTCATAAACGAGGTAAACACGCTTGCATCATTGCAACATCCCCACCTCTGTAAGTTGCTTGGTTTCCATGCGCGTGAGGGATCTGACCAGAGGATGTTGGTTTATGAGAGGCTCTACCATGGAAGCTTAGACCGTCTTCTATATGGGAGATCGGATGGGCCATCCATTGATTGGAACACAAGAATGAAAGTTGCTTTATGTGCTGCACAGGGTCTCACTTTCTTGCATGAAGAAGGGCCTTTCCAGGCTATGTACAATGAATTTTCAACTGCCAATATACAGATTGACAAGGATTTTAGTGCAAAGCTTTCGGGATATGGTTGCGTTGGCCACATTCCAGAAGCAGATGTTTGCAGTAGTTCAGTTGCAGTAGCAAATCTATCAGTGGAGACATTAGAGAGAGGATTACTAACTCCCAAAAGCAATGTTTGGAGTTTTGGAATAGTTCTTCTTGAGCTACTCACTGGGCACAAGAACCTTGACAGCCGCCATCCGAAGGAAGAGAGGAACTTAGTTAAGTGGAGCCGACCTTATCTGGCCGATGATTGTCGACTCTCATTGATAATGGATCCTCACCTAAAAGGCCGCTTCCCTGCCAAAGCAGCCCGAACAGTGGCAGATATTGCCCAAAGATGTCTTCAGATGGACCCCTTAGAAAGACCCACCATGAGAACCATTGTGGAGCATCTCAAAATCATTCAAGACATGAAGTATTCCTGCCGGTTTCCTCTGCAAGAGCCGGCAGCAGTTGCTGGAAAACAGATGTCAAGATCGCCTAGTCTCAATGGGATCATTACCCCAGCGCCCAGGCTAAGTTTCTCCCCTTCTCCGCCATCAAGAACCCACCTCTCCGTTTCTCCAACAAGACCGCCTGTAGTACCCGTGTCTCTTCCTCCCCGAGCCTGTTCCTCCACTCTCTCTTTGGAGGACCTTGAACGGCAGGAAAGCAGGAAATCTTCATCATCAACATCCACCTTTCGGAGGCCCAGTGTTGAAGGTTTTTGA 1647 0.4706 MGCFKVLKSKKKKAERTAYIKRINPQELTPTTLPEPKLQSRTLQSAPPSFRTLVKPVQPVKRIINSRTRALSAPSSLNTTEQDALASNECEEQEELKSRVGLTKEQRSPNPQPLPLPSPQGTVVLKATGSFKAGNASGPLYASGPLPLPPLGALRNFGYEELSNACLNFSSDRCVSEGLSSIIYKASFGDDASGSKKLEATVTRLHPSTQGLKEFINEVNTLASLQHPHLCKLLGFHAREGSDQRMLVYERLYHGSLDRLLYGRSDGPSIDWNTRMKVALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCVGHIPEADVCSSSVAVANLSVETLERGLLTPKSNVWSFGIVLLELLTGHKNLDSRHPKEERNLVKWSRPYLADDCRLSLIMDPHLKGRFPAKAARTVADIAQRCLQMDPLERPTMRTIVEHLKIIQDMKYSCRFPLQEPAAVAGKQMSRSPSLNGIITPAPRLSFSPSPPSRTHLSVSPTRPPVVPVSLPPRACSSTLSLEDLERQESRKSSSSTSTFRRPSVEGF* 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0444 548 MobiDBLite consensus disorder prediction 25 44 - -
Vvi8g0444 548 MobiDBLite consensus disorder prediction 532 548 - -
Vvi8g0444 548 ProSiteProfiles Protein kinase domain profile. 169 446 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g0444 548 Gene3D Phosphorylase Kinase; domain 1 151 250 - -
Vvi8g0444 548 MobiDBLite consensus disorder prediction 70 86 - -
Vvi8g0444 548 MobiDBLite consensus disorder prediction 70 89 - -
Vvi8g0444 548 MobiDBLite consensus disorder prediction 95 122 - -
Vvi8g0444 548 MobiDBLite consensus disorder prediction 469 500 - -
Vvi8g0444 548 SUPERFAMILY Protein kinase-like (PK-like) 150 455 IPR011009 -
Vvi8g0444 548 Pfam Protein tyrosine and serine/threonine kinase 175 444 IPR001245 GO:0004672|GO:0006468
Vvi8g0444 548 PANTHER OS01G0588500 PROTEIN-RELATED 103 448 - -
Vvi8g0444 548 MobiDBLite consensus disorder prediction 467 548 - -
Vvi8g0444 548 Gene3D Transferase(Phosphotransferase) domain 1 252 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0444 Vvi-Chr8 10745935 10749087 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0444 153 447 Glycoside Hydrolase AT3G07070 38.562 4.03e-54 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-II Vvi8g0444 PK_Tyr_Ser-Thr 3.1e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0444 - - vvi:100246618 1008.05