Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0442 ATGGTGAATCCGATTCTTCATCATCTTCATCATCATCATCATCGCCTCCTGCTCGATACGCCGGAGCCGAGCACCATGTCAAATGGGAACAGTACTCATGAGGCTTATGTGAACGAGACCAACTTCGACACCAACATGGTGATCATCCTAGCAGCCTTGCTATGTGCTCTAATAGGAGCACTTGGGCTCAACTCAATCGTGCGCTGCGCCATGCGCTGCAGCAGAAGGCTCTCCCCGGAGTCCCAGGGGCAAGCTGCTACTGGCCTCAAGAAGCGTGCTCTGCGCCAAATTCCGGTAGCAGTTTATGGGCCCGGAGTGGAGATTCCGGCCACTGAATGCCCAATTTGCCTGGGCGAGTTTGTGCAGGGGGAGAAGGTTAGGGTGTTGCCCAAATGCAATCATGGGTTCCATGTGAGGTGCATAGACACATGGCTGGTGTCACACTCATCCTGCCCAAATTGTCGCCACTCATTGCTTGAGCGCCCAACAACTTCAGACGCAGCTGGTGAGGTTGCCCCGGAACAGCCACAGCCAAATGGGTCCACCCACCAAGGTAGCATTGTCATTGCTGTCCATGAGACAAGTTAA 588 0.5408 MVNPILHHLHHHHHRLLLDTPEPSTMSNGNSTHEAYVNETNFDTNMVIILAALLCALIGALGLNSIVRCAMRCSRRLSPESQGQAATGLKKRALRQIPVAVYGPGVEIPATECPICLGEFVQGEKVRVLPKCNHGFHVRCIDTWLVSHSSCPNCRHSLLERPTTSDAAGEVAPEQPQPNGSTHQGSIVIAVHETS* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0442 195 SMART ring_2 113 154 IPR001841 -
Vvi8g0442 195 CDD RING-H2_EL5-like 112 155 - -
Vvi8g0442 195 Pfam Ring finger domain 112 155 IPR001841 -
Vvi8g0442 195 PANTHER RING-H2 FINGER PROTEIN ATL78 13 166 IPR044602 GO:0016567|GO:0016740
Vvi8g0442 195 SUPERFAMILY RING/U-box 94 161 - -
Vvi8g0442 195 MobiDBLite consensus disorder prediction 165 186 - -
Vvi8g0442 195 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 75 160 IPR013083 -
Vvi8g0442 195 ProSiteProfiles Zinc finger RING-type profile. 113 155 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0442 Vvi-Chr8 10736891 10737478 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0442 15 163 C3H Transcription Factor Family AT3G10910 59.146 1.50e-61 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0442 K19040 - vvi:100251758 382.489