Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0435 ATGGCCGTCAAAGCAATAATCCATATTCTGTTGCCTCTTGTCTTCTTCCTTGTCTTCAGTTCATTTGTCCCAAGAATTTACAGTGACGGTGGTGGGTGGCAGAATGCCCACGCCACATTCTACGGCAACCAAGATATGGGGGGAGCATGTGGATATGGTGCCGCTACGAGCTACGGTCCCTACACCGCAGCACTAAGCAATGCTCTATTCAACGATGGGTACAGCTGCGGGTCGTGTTATGAGTTGCAGTGCACCAACGACAGACAGTGGTGCATCGCAGGCACCGTCACCGTGACTGCTACCAACAACTGTCCGCCGGACCCGAGTAAACCTAATGACAACGGTGGGTGGTGCAACCCCCCTCTCCAACACTTCGACTTGTCGGAGCCTGCCTTCTTGAAGATCGCGCAGTATAAGGCTGGGATAGTTCCGGTACTGTACAGAAGGGTTTCGTGTGCTGTGCAAGGAGGCATAAGGTTCACCATGAACGGCAACCCCGACTTCATCTTGGTATTGATATCGAATGTGGGTAGTGCAGGGGATGTCCGAGCCGTCTCCATTAAAGGATCCGGGACAGGGTGGGAAACCATGACTAGGAACTGGGGCCAAAACTGGCAGAGCAACGCCAAACTGATTGGTCAAAGCATATCCTTCAAGGTCACCACCAGCGATGGCAAGTCCGTGACCAGCAACGATGTAGTGCCAGCCAATTGGAAATTTGGACAAACTTTTGAAGGAGCTCAGTTCTAG 750 0.5227 MAVKAIIHILLPLVFFLVFSSFVPRIYSDGGGWQNAHATFYGNQDMGGACGYGAATSYGPYTAALSNALFNDGYSCGSCYELQCTNDRQWCIAGTVTVTATNNCPPDPSKPNDNGGWCNPPLQHFDLSEPAFLKIAQYKAGIVPVLYRRVSCAVQGGIRFTMNGNPDFILVLISNVGSAGDVRAVSIKGSGTGWETMTRNWGQNWQSNAKLIGQSISFKVTTSDGKSVTSNDVVPANWKFGQTFEGAQF* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0435 249 Gene3D - 157 249 IPR036749 -
Vvi8g0435 249 CDD DPBB_EXPA_N 32 152 - -
Vvi8g0435 249 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 157 IPR007112 -
Vvi8g0435 249 Pfam Expansin C-terminal domain 158 235 IPR007117 -
Vvi8g0435 249 PRINTS Expansin/Lol pI family signature 32 47 IPR007118 GO:0005576
Vvi8g0435 249 PRINTS Expansin/Lol pI family signature 232 246 IPR007118 GO:0005576
Vvi8g0435 249 PRINTS Expansin/Lol pI family signature 140 156 IPR007118 GO:0005576
Vvi8g0435 249 PRINTS Expansin/Lol pI family signature 194 208 IPR007118 GO:0005576
Vvi8g0435 249 SUPERFAMILY Barwin-like endoglucanases 14 175 IPR036908 -
Vvi8g0435 249 Gene3D - 21 153 IPR036908 -
Vvi8g0435 249 SUPERFAMILY PHL pollen allergen 155 246 IPR036749 -
Vvi8g0435 249 PRINTS Expansin signature 132 145 IPR002963 GO:0009664
Vvi8g0435 249 PRINTS Expansin signature 156 168 IPR002963 GO:0009664
Vvi8g0435 249 PRINTS Expansin signature 84 95 IPR002963 GO:0009664
Vvi8g0435 249 PRINTS Expansin signature 232 248 IPR002963 GO:0009664
Vvi8g0435 249 PRINTS Expansin signature 168 189 IPR002963 GO:0009664
Vvi8g0435 249 PRINTS Expansin signature 57 71 IPR002963 GO:0009664
Vvi8g0435 249 PRINTS Expansin signature 96 106 IPR002963 GO:0009664
Vvi8g0435 249 PRINTS Expansin signature 115 132 IPR002963 GO:0009664
Vvi8g0435 249 PRINTS Expansin signature 203 224 IPR002963 GO:0009664
Vvi8g0435 249 FunFam Expansin 157 249 - -
Vvi8g0435 249 SMART dpbb_1 62 147 IPR007112 -
Vvi8g0435 249 Pfam Lytic transglycolase 62 147 IPR009009 -
Vvi8g0435 249 PANTHER EXPANSIN-A15 15 249 IPR002963 GO:0009664
Vvi8g0435 249 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 167 246 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0435 Vvi-Chr8 10683123 10683967 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0435 22 249 Expansin Gene Family AT2G40610 65.106 9.36e-112 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0435 - K20628 vvi:100267155 508.834