Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0427 ATGAATAATACTCGGTTGGGAGAATGTCGAGGTGGAGCGAGGCAACAATTTGGATACGTTGAGACCGATCCATCTGGTCGGTATGGGCGTTTCAGGGAAATTCTTGGCAAAGGAGCAATGAAGACAGTGTACAAGGCATTCGACGAGTTCCTTGGCATGGAGGTGGCTTGGAATCAGGTGAAGCTGAACGATGTCTTCAATTCACCCGACGATTTGCAGCGACTCTACTCTGAGGTTCACCTCCTCAAGAACCTCGATCATGACTCCATAATGCGATTCCACACATCTTGGATCGACCTTGATGGAGGAACCTTCAACTTCATCTCTGAAATGTTTACCTCTGGCACCCTCAGAGAGTATAGACAAAAGTACAAGCGGGTTGACATTGGAGCTGTTAAGAACTGGGCACGCCAGATTCTACATGGGCTTGCTTATCTGCACGGCCATGACCCTCCGGTGATCCACAGAGACCTCAAGTGCGATAACATCTTTGTGAATGGTCATCTTGGACAGGTCAAGATTGGTGATCTAGGCTTAGCAGCTATTCTTCGGGGTTCCCAACACGCCCACAGCGTCATAGGTACACCGGAGTTCATGGCACCGGAATTATATGAAGAAGAGTACGACGAGCTTGTAGATGTATACTCCTTTGGCATGTGTGTGTTAGAGATGCTTACATCAGAGTACCCATATTGCGAATGCTCCAATCCTGCTCAGATATACAAGAAAGTGACTTCGGGAAAGCTACCAGAAGCATTCTACAGGATTGAAGATGTTGAGGCAAGGGAATTTGTGGGAAGATGTTTAGAGCATGTTGCAAAGAGGTTGCCTGCCAAAGAGCTCTTGATGGACCCTTTTCTAGCAGTGGACCATGGAGAGCAGATGTTGCCCATGCTAAAGATATCGAGTCAGAAGCCAAGTCCTAATGGAACAGTGGAGAAGATACCATCTTTCCAGACTAATCCTAGGAAAAGGAGTACAGATATGACGATCACAGGCACCATAAATCCGGATGACTATACAATTTTTCTTAAAGTGGCAATCTCTGATAAAGATGGTCTTTCAAGGAACATTTACTTTCCCTTTGACATTGGAAGTGACACTCCAATAGACGTTGCAGCTGAGATGGTGAGGGAATTGGAAATCACAGATTGGGAGCCATTTGAGATAGCCAAGATGATTGAGGAGGAGATTTTTGCTTTGGTTCCAAGTTGGAAGCAATGTACCTCACCTGAAAATCATCAGCATAGCTTCGAATATGAAGAAGAAGAAGAAGAAGAAGATGATGACGACGAAACTTACCATCCTTTCTACTGTTATGCCTCTGAGTCCTCTCGGGTTGCTCTCCAAGATCTCAGCATTTCATGTGAGATCCAATCTCAACATAGGAACCATATGATTTCCGGCGAGGACTGGTTTCAAGGTTTGCTCATCAATGACGATGCAAGTTCTCAAAGCTCCTTAAACTCCGACAAGTACTCCACTTTAGTTTACTGCTCAGTCACTGAAAATGATATTGATCACCTAGCTCCCAAAAGAGTAGAGCCCATCTTCACTGCAAGTACCCACAAGTCCACTAGGTTCTGCCCTGAAGAAGGCACGAGTAGCTGGAACCAATGCAATGGTTCGCGGAGACCATATGACTCAAATTGTCATCGGAAATTAAGCAGGATAAAATCATTTGTGGATGTGCGCAGCCAGCTGTTGCGGCGGTCTCTAATGGAGATGATAAACAAACGGCGATTGTTCAAAACCATCGGAGCTGTTGAGAACATCGGGTATCAAGAACCAGGCAAGTTTCCCAAAGAGATGTCAATGACTGGTGGTTTGTCTGGGAACTCTCCCAGAAACAGTGAAAAGCAGAGATTTAAATGCTGA 1878 0.4542 MNNTRLGECRGGARQQFGYVETDPSGRYGRFREILGKGAMKTVYKAFDEFLGMEVAWNQVKLNDVFNSPDDLQRLYSEVHLLKNLDHDSIMRFHTSWIDLDGGTFNFISEMFTSGTLREYRQKYKRVDIGAVKNWARQILHGLAYLHGHDPPVIHRDLKCDNIFVNGHLGQVKIGDLGLAAILRGSQHAHSVIGTPEFMAPELYEEEYDELVDVYSFGMCVLEMLTSEYPYCECSNPAQIYKKVTSGKLPEAFYRIEDVEAREFVGRCLEHVAKRLPAKELLMDPFLAVDHGEQMLPMLKISSQKPSPNGTVEKIPSFQTNPRKRSTDMTITGTINPDDYTIFLKVAISDKDGLSRNIYFPFDIGSDTPIDVAAEMVRELEITDWEPFEIAKMIEEEIFALVPSWKQCTSPENHQHSFEYEEEEEEEDDDDETYHPFYCYASESSRVALQDLSISCEIQSQHRNHMISGEDWFQGLLINDDASSQSSLNSDKYSTLVYCSVTENDIDHLAPKRVEPIFTASTHKSTRFCPEEGTSSWNQCNGSRRPYDSNCHRKLSRIKSFVDVRSQLLRRSLMEMINKRRLFKTIGAVENIGYQEPGKFPKEMSMTGGLSGNSPRNSEKQRFKC* 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0427 625 FunFam Probable serine/threonine-protein kinase WNK1 13 110 - -
Vvi8g0427 625 MobiDBLite consensus disorder prediction 302 331 - -
Vvi8g0427 625 ProSiteProfiles Protein kinase domain profile. 29 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g0427 625 SUPERFAMILY Protein kinase-like (PK-like) 31 288 IPR011009 -
Vvi8g0427 625 Gene3D Phosphorylase Kinase; domain 1 14 110 - -
Vvi8g0427 625 CDD STKc_WNK 27 287 - -
Vvi8g0427 625 ProSitePatterns Serine/Threonine protein kinases active-site signature. 153 165 IPR008271 GO:0004672|GO:0006468
Vvi8g0427 625 Pfam Protein kinase domain 33 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g0427 625 SMART serkin_6 29 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g0427 625 Gene3D Transferase(Phosphotransferase) domain 1 112 293 - -
Vvi8g0427 625 FunFam probable serine/threonine-protein kinase WNK9 112 292 - -
Vvi8g0427 625 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 19 507 - -
Vvi8g0427 625 MobiDBLite consensus disorder prediction 598 625 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0427 Vvi-Chr8 10519601 10523796 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0427 8 433 MAP Kinase Kinase Kinase AT3G51630 69.142 0.0 616
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Vvi8g0427 Pkinase 7.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0427 K08867 - vvi:100263648 1256.89