Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0425 ATGGGTAATTACAAGTTTAGGTTATCAGATATGATGCCTAATGCTTGGTTTTACAAGCTCAAGGACATGGGCAGAGGCAGAGGCCATAACAGTGGGCATTCCATTAAGAAAAAGCAATCTACAAAAACTGCAGCAGCACAGGCGGGCAAGCCAAAGCAGCCCCACAGAGATTGTCCCAGAAAGTCTTACTACTTCACGAGAGACCCCATCTCCAGTGATGGATTCTTCCATTCTCCCACAAACCCCAAAGTCTCGGACACAAATTTTCCTGACCCACCAAGAAGATCGTCCAAACAGCGTGTCAGGAGAAGGGCCCTGAGGTCTTCTCCCAGGCTCGTCACCTCCTCTGTTTCCGCCGGTTGTAGCTGCCGCGCCACTCTCGAGTCCGTCTGGACTAAGTCCGATTCCACCCCGGACTTCTGGGATTCTCCTCTTGACAGCTCTCCTGATGGAGTTTCGCTGCTTCCGGAATTGGGGTCTGACCGGATTCAGTCTGCGGAGTCGTTTGATGGGATGGTTTCATGGGCGAGTTCTTGTAGCTGCAGAGTCGATTCCACTGCCAATGACTTCGTAATCGACGTGGAAGAGAAGTCTTTCTCTAGGAAATTTGATAAGCTAGACGGGTTCGAAACCATTTCGGAGCTTGACCTCCCTCCAATCATAACCAAACCTGCTAAATTCAACGAGATGGTAAATGATATCAAGAAGAAGGAGATGACTGAACCGGTCAAGGTTCGGAGGAGTTCAGCAAAATTTGAGGAGAGAAATGCTCATGGATCCTTATCTGTGAAGATTGTCAAGGAGGAAAGCATTGGTATGAAAAAGCAAAAGCCCAGTCCTGTTCGAAGATTTTCTGGGAATTCTCCCGGAGTGAGGCTCCGGAACAACTCACCCAGAATTGCGAGCCGGAAAATTCAGTCTCATGGTCGGAAAAGTGTCTCTTCTACTTCAAGTTCAAGCTCCCGGAGGAGTCTTTCTGATAGCTTTGCCATAGTGAAGTCCTCCTTCGATCCTCAGAGGGACTTCAGGGATTCAATGATGGAGATGATTGTGGAGAACAACATCAGGGCATCAAAGGACTTAGAAGAGCTTCTGGCCTGTTATCTTTCCTTGAACTCAGATGAGTATCATGACATCATTATCAAAGTGTTTAAGCAAATCTGGTTCGATATCCCTGATGTCCACAATAAACACCATAATTACAAATTTGGGAATGCACCGGTTCAAAGGACTTATGTCCTGGCGCAGAAATATGAAGGAGATTAG 1266 0.4716 MGNYKFRLSDMMPNAWFYKLKDMGRGRGHNSGHSIKKKQSTKTAAAQAGKPKQPHRDCPRKSYYFTRDPISSDGFFHSPTNPKVSDTNFPDPPRRSSKQRVRRRALRSSPRLVTSSVSAGCSCRATLESVWTKSDSTPDFWDSPLDSSPDGVSLLPELGSDRIQSAESFDGMVSWASSCSCRVDSTANDFVIDVEEKSFSRKFDKLDGFETISELDLPPIITKPAKFNEMVNDIKKKEMTEPVKVRRSSAKFEERNAHGSLSVKIVKEESIGMKKQKPSPVRRFSGNSPGVRLRNNSPRIASRKIQSHGRKSVSSTSSSSSRRSLSDSFAIVKSSFDPQRDFRDSMMEMIVENNIRASKDLEELLACYLSLNSDEYHDIIIKVFKQIWFDIPDVHNKHHNYKFGNAPVQRTYVLAQKYEGD* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0425 421 MobiDBLite consensus disorder prediction 73 94 - -
Vvi8g0425 421 ProSiteProfiles OVATE domain profile. 331 390 IPR006458 -
Vvi8g0425 421 MobiDBLite consensus disorder prediction 267 322 - -
Vvi8g0425 421 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 116 391 IPR038933 GO:0045892
Vvi8g0425 421 MobiDBLite consensus disorder prediction 289 322 - -
Vvi8g0425 421 Pfam Transcriptional repressor, ovate 335 390 IPR006458 -
Vvi8g0425 421 NCBIfam uncharacterized plant-specific domain TIGR01568 330 390 IPR006458 -
Vvi8g0425 421 MobiDBLite consensus disorder prediction 26 111 - -
Vvi8g0425 421 Pfam DNA-binding domain 1 41 IPR025830 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0425 Vvi-Chr8 10497833 10502987 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Vvi8g0425 Ovate 9.4e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0425 - - vvi:100255128 753.051