Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0424 ATGGCGATATCTCCACAAAACTTTCCCAGAAAACGGCGTCCATCCGCCGGATCGTTCATTTCTCCTACCTTATCCGATCGCAGATTGGTTCAATCTCTGCTTCTGGTCTCTCAAGAGATTTCGTCTCTGGCGCCGCTTCAGTTTCTTCTCAAGCGCAATTCCGTTTCAATTATTCGCAAATCTAATCTCCTCGCCTTCCTGTTCGAAGAGCTTCTGCGCAATCCGGTGTCCTGTTTCGCTCCTACGGCTATCCTCTGCTTTGAAGAAATGTATATAGTCTTGCAAAGGATGAAAACATTGATCGAGGATTGTTCCAACGGAAGCAGGACATGGCTTCTCATGCAGAACGAATCGGTTTCCAACGGTTTTCATGAACTCACTCTGGATTTATCGACCTTGTTGGATATTATTCCGGTGAAAGGCCTGGATTTGGTCGAAGATATTGAAGAACTGGTCCTTTTAATCAGAAAACAGTGTTCGGAAACCGCTGCTTATGTAGATCCCACAGATGAAACTCTCAGACGAGATTTACTGAAAATGCTCGATCAGATCAAGAGGGAGATTGTTCCCGATCATAAAAAATTAGCCGAGATATTTGAGAAATTAGATTTACAAGACTCCGCAAGTTGCAGTGATGAGATTAAAAGCCTTGAAGAAGAGTTTCAGAATCAAAGGGATGACAAAAGCAAATCTGAAGTCACAGCATTGATCGGCCTGGTCCGTTACGCCAAGTGCGTTCTCTTCGGAGCATCCACGCCCAAGTCCCACGGTCGGCGGCAAAAATCCATGACGGACACAATTATACCGGCCGACTTCCGGTGTCCGATCACTCTCGACCTGATGCGGGACCCAGTAGTCGTGGCAACGGGACAGACGTATGATCGGACATCGATCAATCGCTGGATCGAATCTGGACACAACATGTGTCCCAAGACAGGTCAGATCCTAGCCCACACAAACCTAATCCAAAACCGCGCTCTCAGGAACCTCATCATACTATGGTGCCGGGAGCAAGAAATTCCATTCCAAACAACGGAAGTCAACGACAAAGTTAAAGCCGCCACGCAAAACAAAACGCTTTTCGGCGCCACGAAGATGACCGTGTTATTTCTCATCAACAAGTTAACCGATTCAGAGTCGGTGGAGGCCACGAATCGCGTGGTTCACGAGCTTCGCGTACTCGCCAAGACAGATTCGGAGAGCCGAGCCTGCATTGCCGAAGCAGGAGCTATACCTTTGCTGGTGAGGTTCTTGGGTTCTGACAACCCAAGCCTCCAGGTCAACGCCGTCACAACGCTCCTCAACCTTTCCATCCTGGAAGCCAACAAGACCAGGATAATGGAAATAGATGGAGCTCTGAACGGCGTCATCGAGGTGCTGAGATCAGGTGCCACGTGGGAGGCGAAGGGCAACGCGGCAGCCACCATATTTAGCCTAGCTGGAGTGCAGTCGTATAGGAAGAGATTGGGGAAGAAGACGCGCGTCATAAAGGGGTTGATGGATTTGGCTAAAGGGGGACCCGCGTCTTCGAGAAGAGATGCATTGGTGGCAATTTTAAGTTTGGCGGGTGAAAGAGATACAGTTGGGAGGTTAATCGAAGGAGGAGTGGTGGAGATGGTCATTGAAGTAATGGCAGCATCACCGGAGGAGGCTGAGGAGGCTGTGACTGTACTGGAGGTGGTGGTGCGGAGAGGTGGATTAGTGGCAGTTGCTGCAGCTTACCATGCAATCAAGAAACTGAGTGTGGTGTTGAGGAGCGGATCGGACAGAGCAAGAGAGAGTGCCGCGGCCACGCTTGTTAATATTTGTAGAAAAGGAGGGTCGGAGACGGTGGCAGCGCTTGCGGCAATGCCAGGAATAGAGAGAGTGATATGGGAGTTGATGGGAACTGGAACTGAGAGATGTAGAAGGAAAGCAGCGTCGTTGTTGAGAATGCTCCGGAGATGGGCAGCTGGGTTGGATGAGGATGTACCCACTACCACTGGCCACTCCACCACTGTAACCACTACCTCCAGGCCAGTACTGCACAGCTGA 2034 0.5005 MAISPQNFPRKRRPSAGSFISPTLSDRRLVQSLLLVSQEISSLAPLQFLLKRNSVSIIRKSNLLAFLFEELLRNPVSCFAPTAILCFEEMYIVLQRMKTLIEDCSNGSRTWLLMQNESVSNGFHELTLDLSTLLDIIPVKGLDLVEDIEELVLLIRKQCSETAAYVDPTDETLRRDLLKMLDQIKREIVPDHKKLAEIFEKLDLQDSASCSDEIKSLEEEFQNQRDDKSKSEVTALIGLVRYAKCVLFGASTPKSHGRRQKSMTDTIIPADFRCPITLDLMRDPVVVATGQTYDRTSINRWIESGHNMCPKTGQILAHTNLIQNRALRNLIILWCREQEIPFQTTEVNDKVKAATQNKTLFGATKMTVLFLINKLTDSESVEATNRVVHELRVLAKTDSESRACIAEAGAIPLLVRFLGSDNPSLQVNAVTTLLNLSILEANKTRIMEIDGALNGVIEVLRSGATWEAKGNAAATIFSLAGVQSYRKRLGKKTRVIKGLMDLAKGGPASSRRDALVAILSLAGERDTVGRLIEGGVVEMVIEVMAASPEEAEEAVTVLEVVVRRGGLVAVAAAYHAIKKLSVVLRSGSDRARESAAATLVNICRKGGSETVAALAAMPGIERVIWELMGTGTERCRRKAASLLRMLRRWAAGLDEDVPTTTGHSTTVTTTSRPVLHS* 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0424 677 Gene3D - 528 655 IPR011989 -
Vvi8g0424 677 SMART arm_5 398 438 IPR000225 GO:0005515
Vvi8g0424 677 Pfam U-box domain 268 339 IPR003613 GO:0004842|GO:0016567
Vvi8g0424 677 SUPERFAMILY RING/U-box 259 341 - -
Vvi8g0424 677 SUPERFAMILY ARM repeat 370 646 IPR016024 -
Vvi8g0424 677 MobiDBLite consensus disorder prediction 657 677 - -
Vvi8g0424 677 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 251 351 IPR013083 -
Vvi8g0424 677 SMART Ubox_2 271 334 IPR003613 GO:0004842|GO:0016567
Vvi8g0424 677 FunFam RING-type E3 ubiquitin transferase 251 347 - -
Vvi8g0424 677 Coils Coil 207 234 - -
Vvi8g0424 677 PANTHER U BOX DOMAIN-CONTAINING 60 648 - -
Vvi8g0424 677 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 409 451 IPR000225 GO:0005515
Vvi8g0424 677 Gene3D - 352 527 IPR011989 -
Vvi8g0424 677 MobiDBLite consensus disorder prediction 658 677 - -
Vvi8g0424 677 Pfam Armadillo/beta-catenin-like repeat 398 437 IPR000225 GO:0005515
Vvi8g0424 677 ProSiteProfiles U-box domain profile. 267 341 IPR003613 GO:0004842|GO:0016567
Vvi8g0424 677 CDD RING-Ubox_PUB 269 321 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0424 Vvi-Chr8 10460853 10462886 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0424 10 675 U-box Gene Family AT5G01830 59.733 0.0 763
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0424 - - vvi:100256780 1244.95