Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0423 ATGAGCAGTGAGCACCACCGGTCCACCACATCAAGGCGCTTTGTTCCTTCTCCGGAAATTGTGGTTTCAGAGATGGAGAACGATACTGGAGATGCTGATCCGGCGAACGAAGATATTCAGCCGGAGATAACTTTGTTCGGAAAGTACGCGGTTGGAAAGTTGCTCGGCTATGGAGCCTTCGCGAAGGTCTACCACGCAAGGAACATCCGAACGGGCCAAAGCGTGGCGATCAAGGCGGTGAGCAAGAAAAAGGTGATGAAAGGAGGATTGACGGCCCATGTGAAGCGGGAGATTTCTATCATGCGCCGGCTACGGCATCCTCACATCGTTAAGCTGTATGAGGTCTTGGCGACGAAAACGAAGATCTACTTCGTGATGGAGTACGCCAAAGGTGGTGAGCTCTTTACAAAAATAGCCAAGGGGCGGTTCAGCGAAGACCTCAGTCGCCGGTATTTTCAGCAGCTGATCTCCGCCATTGGATATTGCCACTCCCGAGGCGTTTTCCACCGCGATTTGAAGCCGGAGAACCTTCTTCTCGACGAGAATTGGAACCTTAAAGTCTCCGATTTCGGTCTCAGCGCCGTGAAGGATCAGATCCGGGCCGATGGTCTCCTACACACTCTCTGCGGTACCCCGGCGTATGTGGCGCCGGAGATTCTAGCGAAGAAAGGTTACGATGGTACCAAGGTGGATATCTGGACTTGCGGCATCATTCTCTATGTATTGAACGCCGGTTATCTTCCGTTCAACGATCCAAACCTCATGGGAATGTACCGGAAGATCTATAAAGGCGAGTTTCGGTGTCCGAAATGGACTTCTCCTGATATGCGACGCCTTCTATCACGCCTTCTCGATACGAATCCAGAGACGAGAATCACTGTCGATGAGATCATCCGTGACCCTTGGTTCCAAAAGGGTTACAAGGAAATTAAATTCCACGTGGAAGATTTTGATTTCAAGGATCACGACGACGACGACGACAACGCCGAGTACATGAACGCGTTCCACATTATCTCATTCTCGTCCGGTTTCGAATTCTCCAGTATGTTGAACGATTCCGGCATTTCGGTGGCCGGTGAAAGATTCGTATCGGCCGAGTCACCGGAGAAAATAATAGAAAAGGTCGAGGACGTGGCAAAAAAGGAGAACGTAACAGTGACGAGAAAGGAAAATTGGGGAGTGATGTTGGAGGGACAAAACGGTAATTTCGCCTTGATAATGGAGATATATCGGTTGACGGAGAAGCTGGTCCTGGTAGAGGTGAGGAAGAAAGAGGTGGACGCTGGACTAGGACCTGGCAAAGAAATCTGGCGAGACACACTCCGGCCGCAGCTCAGCGAACTGATTTATCAACCGGAGGAGCCGAGCACCGAGAGCTGA 1380 0.5094 MSSEHHRSTTSRRFVPSPEIVVSEMENDTGDADPANEDIQPEITLFGKYAVGKLLGYGAFAKVYHARNIRTGQSVAIKAVSKKKVMKGGLTAHVKREISIMRRLRHPHIVKLYEVLATKTKIYFVMEYAKGGELFTKIAKGRFSEDLSRRYFQQLISAIGYCHSRGVFHRDLKPENLLLDENWNLKVSDFGLSAVKDQIRADGLLHTLCGTPAYVAPEILAKKGYDGTKVDIWTCGIILYVLNAGYLPFNDPNLMGMYRKIYKGEFRCPKWTSPDMRRLLSRLLDTNPETRITVDEIIRDPWFQKGYKEIKFHVEDFDFKDHDDDDDNAEYMNAFHIISFSSGFEFSSMLNDSGISVAGERFVSAESPEKIIEKVEDVAKKENVTVTRKENWGVMLEGQNGNFALIMEIYRLTEKLVLVEVRKKEVDAGLGPGKEIWRDTLRPQLSELIYQPEEPSTES* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0423 459 ProSiteProfiles NAF domain profile. 327 351 IPR018451 GO:0007165
Vvi8g0423 459 CDD CIPK_C 333 445 - -
Vvi8g0423 459 Gene3D Phosphorylase Kinase; domain 1 39 128 - -
Vvi8g0423 459 SUPERFAMILY Protein kinase-like (PK-like) 46 313 IPR011009 -
Vvi8g0423 459 Pfam Protein kinase domain 49 303 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g0423 459 ProSiteProfiles Protein kinase domain profile. 49 303 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g0423 459 Gene3D Kinase associated domain 1, KA1 328 451 - -
Vvi8g0423 459 FunFam Non-specific serine/threonine protein kinase 40 334 - -
Vvi8g0423 459 Gene3D Transferase(Phosphotransferase) domain 1 129 310 - -
Vvi8g0423 459 ProSitePatterns Protein kinases ATP-binding region signature. 55 78 IPR017441 GO:0005524
Vvi8g0423 459 FunFam Non-specific serine/threonine protein kinase 40 128 - -
Vvi8g0423 459 SMART serkin_6 49 303 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g0423 459 ProSitePatterns Serine/Threonine protein kinases active-site signature. 167 179 IPR008271 GO:0004672|GO:0006468
Vvi8g0423 459 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 40 427 - -
Vvi8g0423 459 Pfam NAF domain 330 387 IPR004041 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0423 Vvi-Chr8 10443313 10444884 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0423 31 458 CBL-interacting serine-threonine protein kinases AT5G01820 64.450 0.0 545
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vvi8g0423 Pkinase 5.9e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0423 - K12761 vvi:100260217 819.69