LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi8g0418	ATGGAAAATAATGGGAGTATCCTGATGCAACGGTATGAATTAGGGAAATTATTAGGTCAAGGCACCTTTGCCAAGGTCCATCATGCCAGGAACCTTAAAACTGGCACCAGTGTTGCCATTAAGATAATTGATAAAGAGAAGATTTTGAAGGTTGGGATGGTGGATCAGATTAAGCGAGAGATTTCTGTAATGAGACTGGTTAGACACCCAAATGTGGTAGAGCTTTATGAGGTTATGGCCAGCAAAACGAAGATTTACTTTGTCATGGAATATGCTAAAGGAGGGGAGCTCTTCAACAAGGTAGCCAAAGGAAAGCTCAAGGAGGATGTTGCAAGGAAATATTTTCAACAGCTGATCAGTGCGGTTGATTTCTGTCACAGTAGAGGTGTTTATCATCGGGATTTAAAGCCAGAAAACCTTCTACTGGATGAGAATGGAAATCTAAAAGTTTCAGACTTTGGACTGAGTGCCCTTGCTGAATCTAAGCACCAAGATGGGTTGCTTCACACAACCTGTGGAACCCCCGCCTATGTTGCTCCAGAGGTGATCAATAGGAAAGGCTATGATGGAGCCAAAGCTGATATATGGTCATGTGGGGTGGTCTTATTCGTTTTGTTGGCTGGCTATCTCCCATTTCATGATTCAAATCTGATGGAGTTGTATAGGAAGATTGGTAAGGCAGAATATAGATTCCCTAACTGGTTCCCTTCGGAAGTACGAAGGTTGCTGTCAAAGATCTTGGATCCAAACCCAAAGACTAGGATTTCCATTACCAAAATAATGGAAAATTCTTGGTTCCAAAAGGGTCTTGATCCTGTCCTGAGGATCACTGAAACAGGAGAGAAAGAGCCAGCTGATCTCGAGGTTGAGGCTGTATTTGGTTCTAATGAGAGTGCCAGCACCACTGCTGAGGCAAAGCAAGAATTGGCGACGCTTAGTAACTTGAATGCGTTTGATATCATTTCCTTTTCAGCAGGGTTTGACTTGTCTGGTTTGTTCGAGGAAAATAAGCAAAAGAAAGAAGTGCGATTTACATCTAGGCAGCCAGCCTCAGCCATCATCTCTAAACTGGAGGACATTGCTAAGCGTTTGATGCTGAAGGTGAAGAAGAAGGATGGTGGGTTGTTGAAAATGGAAGGTTCAAAGGAAGGCAGGAAAGGCGTCTTGTCCATTGATGCAGAGATCTTTGAGGTGACTCCATCTTTTCATTTGGTGGAGGTGAAGAAGTCCAGTGGGGACACGTTGGAGTACCAGAAAATAGTGAAACAGGAGATAAGACCAGCTCTCAAGGACATTGTGTGGGCATGGCAAGGTGAGCAGCAGCAGCAGCAACAACAACCAGAAGAGCCAATGCCCCTATTGCAGCCCATCTCACCTCCAGCTTCATAA	1389	0.442	MENNGSILMQRYELGKLLGQGTFAKVHHARNLKTGTSVAIKIIDKEKILKVGMVDQIKREISVMRLVRHPNVVELYEVMASKTKIYFVMEYAKGGELFNKVAKGKLKEDVARKYFQQLISAVDFCHSRGVYHRDLKPENLLLDENGNLKVSDFGLSALAESKHQDGLLHTTCGTPAYVAPEVINRKGYDGAKADIWSCGVVLFVLLAGYLPFHDSNLMELYRKIGKAEYRFPNWFPSEVRRLLSKILDPNPKTRISITKIMENSWFQKGLDPVLRITETGEKEPADLEVEAVFGSNESASTTAEAKQELATLSNLNAFDIISFSAGFDLSGLFEENKQKKEVRFTSRQPASAIISKLEDIAKRLMLKVKKKDGGLLKMEGSKEGRKGVLSIDAEIFEVTPSFHLVEVKKSSGDTLEYQKIVKQEIRPALKDIVWAWQGEQQQQQQQPEEPMPLLQPISPPAS*	463

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi8g0418	462	Gene3D	Kinase associated domain 1, KA1	310	435	-	-
	Vvi8g0418	462	SMART	serkin_6	12	266	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi8g0418	462	CDD	STKc_SnRK3	11	265	-	-
	Vvi8g0418	462	Pfam	NAF domain	313	370	IPR004041	GO:0007165
	Vvi8g0418	462	PANTHER	CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED	4	431	-	-
	Vvi8g0418	462	ProSitePatterns	Protein kinases ATP-binding region signature.	18	41	IPR017441	GO:0005524
	Vvi8g0418	462	Gene3D	Phosphorylase Kinase; domain 1	2	91	-	-
	Vvi8g0418	462	FunFam	Non-specific serine/threonine protein kinase	2	308	-	-
	Vvi8g0418	462	SUPERFAMILY	Protein kinase-like (PK-like)	8	279	IPR011009	-
	Vvi8g0418	462	Gene3D	Transferase(Phosphotransferase) domain 1	92	271	-	-
	Vvi8g0418	462	CDD	CIPK_C	316	430	-	-
	Vvi8g0418	462	MobiDBLite	consensus disorder prediction	438	462	-	-
	Vvi8g0418	462	FunFam	Non-specific serine/threonine protein kinase	310	434	-	-
	Vvi8g0418	462	FunFam	Non-specific serine/threonine protein kinase	3	91	-	-
	Vvi8g0418	462	Pfam	Protein kinase domain	12	266	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi8g0418	462	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	130	142	IPR008271	GO:0004672\|GO:0006468
	Vvi8g0418	462	ProSiteProfiles	Protein kinase domain profile.	12	266	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi8g0418	462	ProSiteProfiles	NAF domain profile.	310	334	IPR018451	GO:0007165

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi8g0418	Vvi-Chr8	10383847	10385235	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi8g0418	1	442	CBL-interacting serine-threonine protein kinases	AT5G58380	67.253	0.0	639

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CAMKL-CHK1	Vvi8g0418		Pkinase	6.6e-76	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi8g0418	K07198		-	vvi:100243133	891.338