Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0411 ATGTCTTCTAGGGGGCGAAAGAAAGCAGCTCTATATGAAAAGTTGCAACTACTTCGTTCTGTTACCAACTCTAGTGCTCACAGCAAAACCTCAATTATAGTGGATGCAACTAAGTATATAGAAGACTTGAAGCAAAAGGTAGATAGACTGAACCAAGACGTTGCGACTTCACAATTTTCCGCAGACCAGAATCCATTACCTGTGGTTAAAGTGGAAACCCTAGAAAGGGGCTTTCTAATTAATGTGTTCTCAGAAAGAAATTGCCCAGGTCTGCTAGTCTCAATACTGGAAACCTTTGAGGAGCTGGGGCTTAATGTGCTCGACGCTAGGGTTTCTTGTTCAGATAGTTTTCATCTTGAAGCAGTTGGAGGAGAAAATGAAGGACAACAGGATAGCATAGATGCTCAAGTGGTGAAACAAGCAGTGCTGCAAGCTATCAAGAACTGGAGTGAAAGCAGTGAGCAAGAATAG 471 0.4246 MSSRGRKKAALYEKLQLLRSVTNSSAHSKTSIIVDATKYIEDLKQKVDRLNQDVATSQFSADQNPLPVVKVETLERGFLINVFSERNCPGLLVSILETFEELGLNVLDARVSCSDSFHLEAVGGENEGQQDSIDAQVVKQAVLQAIKNWSESSEQE* 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0411 156 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 151 - -
Vvi8g0411 156 Coils Coil 33 60 - -
Vvi8g0411 156 CDD ACT_UUR-ACR-like 89 146 - -
Vvi8g0411 156 ProSiteProfiles ACT domain profile. 80 156 IPR002912 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0411 Vvi-Chr8 10305229 10306595 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0411 11 144 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 28.082 1.20e-09 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0411 - - vvi:100241403 301.597