Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0383 ATGGCTTCCTCTGCTGCTAGTTTTAACACGAGTTCTCATAATTCCCAGGACGATTTCTCCTTCTCTACCCAGCTGATGTCCTCCTCTTTCACTGATCTTCTCTCCAGCGGCGGAGACATGGATCACAGTGCTCCATTCGCTTGGGCTCTCTCCGATCCTTTAAGTCATACAACCGAATTCCCTAAATTCAAATCCCTCCCTCCCCCTTCACTCCCCATCTCTCCTCCTCCCGTCTCTCCTTCTTCTTACTTTGCGTTTTCATCTGGTTTCAGCTCCACAGACCTCTTGGACTCCCCTCTGCTTCTCTCCTCTTCTAATGTTCTTCCGTCTCCAATCACTGGGAATTTTGCTGCTCCGGGCTTCAACTGGAGGAGTAATTCTAACGAGCACCAGCAGGCTTTCAATGACACAGACAGAAAATTTTCTGATCTCCTTTTCCAGTCCCAAACAAGGCCTTCAGGGGGAGAGGCGTTGAAAACCCAAGCACCATGGAATTCTGATAAACCCGAAAAGCAAACTCATTTCCCACAAGAGAAAACCGGAGTGAAATCAGAATTTGCTTCACTTCAGAGCTTGTCACCGGAAATCGCTTCAATCCAAACCAACATGCAGAGCAACAATATTCCCCAATCTGGCCGGAGCCATCATGCTCAGCCATCTGAGTCTTACAGAGAGCAAAGGAGATCAGACGATGGGTATAACTGGAGAAAGTATGGTCAAAAACAAGTGAAGGGAAGTGAAAATCCGCGTAGTTATTACAAGTGCACGTTTCCAAATTGCCCGACAAAGAAGAAGGTTGAACGATCTTTGGAGGGTCATATTACTGAAATAGTGTACAAGGGAACTCACAGCCATCCTAAGCCTCAGCCCAAGAGATCATCTTCTCAATCATTTCCTTCCGCAAGCACAAACTCGGAAATTTCTGGGCATTCAATGCCAATAGGAAACCCATACATGGATTCTATGACAACGTCTGAGAATTCTTCAGTCTCTATTGGAGAGGATGACTTTGATCAAAACTCTCCAATGAGTAGATCAGGAGGAGATGATGAAAATGAACGGGAGGCCAAAAGATGGAAGGGAGAGTACGAAAATGAGGCAATTTCAGCTTCTGAAAGCAGAACTGTGAAAGAACCTAGAGTAGTGGTTCAAACAACAAGCGACATTGATATTCTTGATGATGGCTATAGATGGAGGAAATATGGGCAGAAAGTAGTCAAGGGAAACCCGAATCCAAGGAGCTACTATAAATGTACGAGTATAGGTTGTCCAGTGAGGAAACATGTGGAGCGATCATCCAAGGATATCAGAGCTGTGCTCACCACATATGAAGGGAAACACAACCATGATGTTCCAGCGGCACGTGGTAGTGGCAGCCATTTTGTGACTAAACCTTTACCAAATAATAGCACCACAACTGTGCCTGCGCCTATAAGGCCCTCAGTCATGACCAACCATTCTAACTACACTACAACTAACGCTAACCCCCAAACAAGGCCACCAACATCAGCAAGTCAAGCACCTTTCACCCTGGAAATGTTGCAGAGCCCGGGGAGTTTTGGATTCTCAGGATTTGGTAGAATGTCTCACCCAGATGGGGTTTTCTCAAGAACCAAGGAAGAGCCTAAGGATGACTTGTTCCAGTCATTTTTTTGCTGA 1659 0.4581 MASSAASFNTSSHNSQDDFSFSTQLMSSSFTDLLSSGGDMDHSAPFAWALSDPLSHTTEFPKFKSLPPPSLPISPPPVSPSSYFAFSSGFSSTDLLDSPLLLSSSNVLPSPITGNFAAPGFNWRSNSNEHQQAFNDTDRKFSDLLFQSQTRPSGGEALKTQAPWNSDKPEKQTHFPQEKTGVKSEFASLQSLSPEIASIQTNMQSNNIPQSGRSHHAQPSESYREQRRSDDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVERSLEGHITEIVYKGTHSHPKPQPKRSSSQSFPSASTNSEISGHSMPIGNPYMDSMTTSENSSVSIGEDDFDQNSPMSRSGGDDENEREAKRWKGEYENEAISASESRTVKEPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTSIGCPVRKHVERSSKDIRAVLTTYEGKHNHDVPAARGSGSHFVTKPLPNNSTTTVPAPIRPSVMTNHSNYTTTNANPQTRPPTSASQAPFTLEMLQSPGSFGFSGFGRMSHPDGVFSRTKEEPKDDLFQSFFC* 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0383 552 SUPERFAMILY WRKY DNA-binding domain 384 452 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi8g0383 552 SUPERFAMILY WRKY DNA-binding domain 225 288 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi8g0383 552 SMART WRKY_cls 392 451 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi8g0383 552 SMART WRKY_cls 229 287 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi8g0383 552 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 108 488 IPR044810 GO:0003700
Vvi8g0383 552 MobiDBLite consensus disorder prediction 448 479 - -
Vvi8g0383 552 MobiDBLite consensus disorder prediction 280 372 - -
Vvi8g0383 552 MobiDBLite consensus disorder prediction 218 235 - -
Vvi8g0383 552 ProSiteProfiles WRKY domain profile. 224 288 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi8g0383 552 MobiDBLite consensus disorder prediction 149 170 - -
Vvi8g0383 552 MobiDBLite consensus disorder prediction 347 372 - -
Vvi8g0383 552 MobiDBLite consensus disorder prediction 288 346 - -
Vvi8g0383 552 MobiDBLite consensus disorder prediction 462 479 - -
Vvi8g0383 552 Gene3D WRKY domain 216 289 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi8g0383 552 Gene3D WRKY domain 377 453 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi8g0383 552 ProSiteProfiles WRKY domain profile. 387 452 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi8g0383 552 FunFam WRKY transcription factor 33 379 445 - -
Vvi8g0383 552 FunFam WRKY transcription factor 212 289 - -
Vvi8g0383 552 MobiDBLite consensus disorder prediction 205 235 - -
Vvi8g0383 552 MobiDBLite consensus disorder prediction 149 181 - -
Vvi8g0383 552 Pfam WRKY DNA -binding domain 393 449 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi8g0383 552 Pfam WRKY DNA -binding domain 230 286 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0383 Vvi-Chr8 9796342 9798804 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0383 26 551 WRKY Transcription Factor Family AT2G38470 44.876 9.06e-125 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vvi8g0383 WRKY 8.4e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0383 K13424 - vvi:109123048 1027.7