Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0380 ATGGGAGCATGTAGCAGCAGGGAAAAGAAGTTTGAAGGAGTGGTGGGGGGAGAGGTTGATGACGTTGAAGATGCGGGTGATGTACGAGTTGAAGATGGAGGGTCTCGTGTTAGGTTGGGGGGAAATTCCATGTATACGTCAATGTTCACTCAAGGAGGAAGAAAAGGGATCAATCAAGATGCCATGACTGTTTGGGAGGACTTTTCAGGTGAGAAAGGCATGTTTTTCTGTGCTGTGCTGGATGGACATGGTCCCTCAGGGCACCATGTTGCAGGCCTTGTACGTGACATTTTACCCTCCAGGCTCTCCTCTGCATTTAAGCTATCATTACCTAATAGCTCCAAATGTGACTCTGATATTGTTCATGGCAACCATAAGGATGATAGCAAAGATAGCCATGAGAACAAAAATTTTGAGTACCCACTATTTCCTTTGTGGAAGGCCAGTTTGATTAAGTCCTTTGAAGAGATGGATGAAGAACTTGGCTCCAATTCCACTTTTGACAGCTTCTGCAGTGGCACAACAGCAGTGACTGTAATCAAACAGGAGGACCATTTGATAATTGCCAACTTGGGGGATTCTCGTGCGGTTCTTTGCACTAGAGGAAACAGAAACCAACTCGTTCCCGTCCAACTCACAGTAGACTTGAAACCAAATCTTCCAAGTGAAGCTGAAAGAATTAAGAATTGCAAAGGCCGGGTATTTGCTTTACCTGATGAATCTGGGGTGTATAGACTATGGATGCCTGATCAAAATTCCCCTGGTCTCGCCATGACAAGGGCTTTTGGAGACTTCTGCTTGAAAGACTACGGCCTTATCTCTATTCCTGACGTTTCTTACAGAAAGCTAACAGACAAGGACGAGTTTGTGGTCCTAGCATCTGATGGGGTATGGGATGTGTTATCAAACTCTGAGGTCACAAGGATAGTTGCTTCAGCTAAGAAGCGGTCCATGGCAGCTCAGCTGTTAGTAGACCGTGCAGTCCGAGAATGGAAGATTAAATATCCGGGCTGCAAGACTGATGATTGTGCAGTCATATGCTTGTTCCTAAAAACCCCACCTTTGTCAACCAAATCCACGTCCAAAAATGGTCGGGATGGTGTGAATAATCACCAGCAGCTTGCAGTGTCTCAACGTTCAGCAACAAGAAGAAGCCAGCAAGGCTGTGAATCTACAAAAGCAAACTCAAAGGAGGAGTATAGTGCTCTTCAAGGAGTCACTAGAGAGAATTCTCTACTCAGTCTTCCTCGGTTTTCCACTGTTCTGGGTAGGCGGAGATCAATCAACCAACCAAGTACGTTAAAGCTGTTTGAAGTGCATAATTAG 1326 0.4532 MGACSSREKKFEGVVGGEVDDVEDAGDVRVEDGGSRVRLGGNSMYTSMFTQGGRKGINQDAMTVWEDFSGEKGMFFCAVLDGHGPSGHHVAGLVRDILPSRLSSAFKLSLPNSSKCDSDIVHGNHKDDSKDSHENKNFEYPLFPLWKASLIKSFEEMDEELGSNSTFDSFCSGTTAVTVIKQEDHLIIANLGDSRAVLCTRGNRNQLVPVQLTVDLKPNLPSEAERIKNCKGRVFALPDESGVYRLWMPDQNSPGLAMTRAFGDFCLKDYGLISIPDVSYRKLTDKDEFVVLASDGVWDVLSNSEVTRIVASAKKRSMAAQLLVDRAVREWKIKYPGCKTDDCAVICLFLKTPPLSTKSTSKNGRDGVNNHQQLAVSQRSATRRSQQGCESTKANSKEEYSALQGVTRENSLLSLPRFSTVLGRRRSINQPSTLKLFEVHN* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0380 441 Gene3D - 38 352 IPR036457 -
Vvi8g0380 441 SMART PP2C_4 34 348 IPR001932 -
Vvi8g0380 441 SUPERFAMILY PP2C-like 39 351 IPR036457 -
Vvi8g0380 441 Pfam Protein phosphatase 2C 137 329 IPR001932 -
Vvi8g0380 441 ProSiteProfiles PPM-type phosphatase domain profile. 45 350 IPR001932 -
Vvi8g0380 441 PANTHER PROTEIN PHOSPHATASE 45 348 IPR015655 GO:0004722|GO:0006470
Vvi8g0380 441 MobiDBLite consensus disorder prediction 357 396 - -
Vvi8g0380 441 CDD PP2Cc 44 350 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0380 Vvi-Chr8 9778439 9780701 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0380 21 418 PP2C-type Phosphatase Gene Family AT1G79630 44.371 1.93e-122 363
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0380 - - vvi:100256885 862.448