Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0369 ATGGGTGATTTGTGCCTGATTTCCGATAATAAGAAAAAGAAATGGAAGAGCCATCCGCGTGACAAATTCAAGTCCTTCCTCTTCAACCACCTGTTCTTGTTGGTTCAGGTGCTGCTTCTCACCTTTCCACTTGTTTCGGGCCATCCATGGGATGGGGTGGTGGTGACTCAAGCAGATTATCAGGCACTCAAAGCCTTAAAACATGAATTCGTTGATTTGAAAGGCGTTTTGAGTACCTGGAATGACAGCGGTTTGGAAGCTTGTTCTGGTGGGTGGATAGGAATCAAGTGTGCTCGGGGACAGGTTATTGCCATTCAACTTCCATGGAAGGGATTGGGGGGCCGAATCTCTGAGAAGATAGGTCAGCTGCAAGCACTCCGGAGGATTAGTCTCCATGACAATCTTCTTGTTGGCCCTGTCCCTACGTCGCTCGGGTTCCTTCCCAACCTTAGAGGTGTTTATCTCTTCAATAACAGGCTTTCAGGTTCAGTCCCGCCTTCTATTGGCTACTGCCTTCTTCTTCAGACCCTTGATGTCAGTAACAATCTGCTCACTGGGACTATTCCGCCTAGTCTGGCGAACTCCACCAAATTATACAGACTCAATCTGAGCTTCAACTCATTCTTTGGGTCAATCCCGGTTAGTCTCACTCAATCCCACTCTCTTATTTTCCTTGCCCTTCAACATAACAACCTCTCTGGTTCCATTCCAAATACTTGGGGTGGAACAGGGAAGAATGTTTATCAACTTCAGACCTTGACTCTTGATCAAAATCGTATCTCGGGAGATATTCCTATTTCTCTGAGTAAATTGGGAAAGCTTGAAGGGATTTCTCTGAGTCATAACCAGATTGATGGGATCATACCTGATGAATTAGGAAGTCTCTCTAGGCTCCAAGTGCTAGATTTGTCCAACAATTCCATTCATGGAAGCTTGCCTGCTAGCCTTTCCAACCTCTCCTCTCTAGCTTTGTTGAATCTTGAGGGCAATCGCCTCAATGGCAATATCCCAGAAGCCATGGACAGGTTGCAAAATCTGTCGGTATTCAACCTGAAGAATAATCAATTCGAAGGCCAAATCCCTGCAACTATTGGGAACATCTCTGGCCTCACGCAAATTGAATTATCTGGAAATCAACTCATTGGAGCAATTCCGGATTCACTAGCCAACCTTCCCAATCTCAGCGATTTCAGTGTTGCTTACAACAATCTCTCCGGTTCTGTTCCATCCCTCCTCTCCCAAAAGTTCAATTCAAGCTCTTTTGTAGGGAACCTACAGCTATGCGGGTACAGCATTTCCACCCCATGTCCTCCTCCACCTCAAATTCTTTCACCTCCACCAAAACAATATCACCGCCGCAGACTAAGTACCAAGGACATAATTCTCATAGCAGCAGGCGCTCTACTAGTAATTCTGCTTCTACTATGCTGTATTTTGCTTTGTTGTTTGATGAGGAAAAAGGCTGCTACAAAAGCAAAAGGTGGTAAAACAGCAGGCGGCTCTGCCACAGGGGGAGGCGAGAAGGCAGTTCCAGCAGTTGGGACTGAAGCTGAATCTGGTGGTGGTGGTGAAACTGGTGGAAAACTAGTCCATTTTGATGGGCCATTTGTGTTCACAGCCGATGATCTGCTGTGCGCAACAGCAGAGATAATGGGGAAGAGCACTTATGGGACTTCATACAAGGCAACACTGGAAGATGGTAACCAAGTTGCAGTTAAGAGGTTAAGGGAGAAGATTGCAAAAGGCCATAAGGAGTTTGAGACTGAGGTTGCTGCTCTCGGAAAGATCAGACACCCAAATCTCTTAGCTCTCAGAGCTTATTACATGGGACCCAAAGGAGAGAAGCTCCTTGTCTTTGATTACATGCCTAAAGGGAGTCTTTCATCCTTCCTTCACGCTCGTGGGCCTGAAACCGTGATCAGTTGGCCAACAAGGATGAACATAGCCATGGGCATCACGCGTGGCCTTTGCTACCTCCATGCTCAAGAGAACATAACACATGGGCATCTCACTTCGAGCAACATACTACTTGATGAGCAAACCAATGCTCATATTGCGGACTACGGCCTGTCCAGGCTTATGACAACTGCAGCCAACACCAATGTTTTTGCCACTGCAGGAGCACTAGGCTACCGAGCACCAGAGCTTTCAAAGATAAAGAAGGCCAATACCAAGAGTGATGTCTACAGCCTTGGGGTAATCATATTGGAACTCTTAACAGGGAAGTCTCCAGGTGAGGAAATGGATGGAGGGGTGGATTTACCCCAGTGGGTAGCATCAATCGTAAAGGAGGAGTGGACAAATGAAGTATTCGACTTGGAGCTGATGAGAGATGCATCAACCACAGGTGATGAGTTGCTTAACACATTGAAATTAGGTCTGCACTGCGTTGACCCTTCGCCTGCTGCACGCCCGGACGTTCAACAAGTTCTCCAGCAACTGGAAGAGATTAAGCCAGAGCTGGGAGCCACTTCTGTTGATGATGGAACCAAAGTCCCCCCCTTGACAAACGAATAA 2517 0.4688 MGDLCLISDNKKKKWKSHPRDKFKSFLFNHLFLLVQVLLLTFPLVSGHPWDGVVVTQADYQALKALKHEFVDLKGVLSTWNDSGLEACSGGWIGIKCARGQVIAIQLPWKGLGGRISEKIGQLQALRRISLHDNLLVGPVPTSLGFLPNLRGVYLFNNRLSGSVPPSIGYCLLLQTLDVSNNLLTGTIPPSLANSTKLYRLNLSFNSFFGSIPVSLTQSHSLIFLALQHNNLSGSIPNTWGGTGKNVYQLQTLTLDQNRISGDIPISLSKLGKLEGISLSHNQIDGIIPDELGSLSRLQVLDLSNNSIHGSLPASLSNLSSLALLNLEGNRLNGNIPEAMDRLQNLSVFNLKNNQFEGQIPATIGNISGLTQIELSGNQLIGAIPDSLANLPNLSDFSVAYNNLSGSVPSLLSQKFNSSSFVGNLQLCGYSISTPCPPPPQILSPPPKQYHRRRLSTKDIILIAAGALLVILLLLCCILLCCLMRKKAATKAKGGKTAGGSATGGGEKAVPAVGTEAESGGGGETGGKLVHFDGPFVFTADDLLCATAEIMGKSTYGTSYKATLEDGNQVAVKRLREKIAKGHKEFETEVAALGKIRHPNLLALRAYYMGPKGEKLLVFDYMPKGSLSSFLHARGPETVISWPTRMNIAMGITRGLCYLHAQENITHGHLTSSNILLDEQTNAHIADYGLSRLMTTAANTNVFATAGALGYRAPELSKIKKANTKSDVYSLGVIILELLTGKSPGEEMDGGVDLPQWVASIVKEEWTNEVFDLELMRDASTTGDELLNTLKLGLHCVDPSPAARPDVQQVLQQLEEIKPELGATSVDDGTKVPPLTNE* 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0369 838 CDD STKc_IRAK 551 817 - -
Vvi8g0369 838 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 56 240 - -
Vvi8g0369 838 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 185 817 - -
Vvi8g0369 838 Pfam Leucine rich repeat 249 308 IPR001611 GO:0005515
Vvi8g0369 838 ProSiteProfiles Protein kinase domain profile. 545 821 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g0369 838 SMART LRR_typ_2 391 414 IPR003591 -
Vvi8g0369 838 SMART LRR_typ_2 295 318 IPR003591 -
Vvi8g0369 838 SMART LRR_typ_2 147 171 IPR003591 -
Vvi8g0369 838 SMART LRR_typ_2 319 343 IPR003591 -
Vvi8g0369 838 SMART LRR_typ_2 271 294 IPR003591 -
Vvi8g0369 838 Gene3D Ribonuclease Inhibitor 55 244 IPR032675 -
Vvi8g0369 838 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 243 439 - -
Vvi8g0369 838 ProSiteProfiles Leucine-rich repeat profile. 297 320 IPR001611 GO:0005515
Vvi8g0369 838 SUPERFAMILY Protein kinase-like (PK-like) 549 815 IPR011009 -
Vvi8g0369 838 MobiDBLite consensus disorder prediction 493 524 - -
Vvi8g0369 838 FunFam Leucine-rich repeat receptor-like protein kinase 531 621 - -
Vvi8g0369 838 Gene3D Ribonuclease Inhibitor 245 440 IPR032675 -
Vvi8g0369 838 Pfam Leucine Rich Repeat 174 193 IPR001611 GO:0005515
Vvi8g0369 838 Gene3D Phosphorylase Kinase; domain 1 551 622 - -
Vvi8g0369 838 Pfam Protein tyrosine and serine/threonine kinase 549 814 IPR001245 GO:0004672|GO:0006468
Vvi8g0369 838 Gene3D Transferase(Phosphotransferase) domain 1 623 829 - -
Vvi8g0369 838 FunFam Pollen receptor-like kinase 1 622 827 - -
Vvi8g0369 838 PRINTS Leucine-rich repeat signature 295 308 - -
Vvi8g0369 838 PRINTS Leucine-rich repeat signature 174 187 - -
Vvi8g0369 838 SUPERFAMILY L domain-like 96 430 - -
Vvi8g0369 838 MobiDBLite consensus disorder prediction 818 838 - -
Vvi8g0369 838 Pfam Leucine rich repeat N-terminal domain 58 97 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0369 Vvi-Chr8 9632070 9634774 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0369 48 819 Receptor kinase-like Gene Family AT3G51740 68.205 0.0 1009
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vvi8g0369 PK_Tyr_Ser-Thr 9.2e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0369 - - vvi:100243128 1520.75