Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0367 ATGGGCTCTTGTGGGAAGAAGTCTAGAGGGAGAAGAAGGCTGTGGCTGGGTTCCTTCTCCACTGCAGAGGAAGCAGCTCGTGCCTATGATGAAGCTGCAAGGGCCATGTATGGTTCTTCCGCCCGTCTCAACTTTCCTGAGGACAGTCAACAATCAGTTGAGTTCTCTCAAGACTCCACATCAACTACAACCAGCACATCGCCCCCCAAATCTATAGAAAGACCAAATAAGTTTGGGACTAGCTTTGCTGAGGAATCAAGTGTAGAACCTGAGTGCCCTGTTGTTTGTCCAAAAGACAATAATAGTACACCTTCCGACGAGGTAGAAGTTGAGACACCTATGGATGAGGAAAATTGCGAAAATGCCACAGATACTGGTGGCTGCTATGGCTCCGGTAATGAGCTTGAGTACTTCCAGAATTTGTTGACACAAGAAACCTATGATTTTGGTCAATTACCAATTGTTACTTCCCCTTCTAATGATGTTGAATTCAAGACCCCAATAATATGGCAAGCAAATAATGAAGAACTTGAGGAGAGTCCAGAGAACAGTGACCATCATGGCTTCAACAAAGGCTTCTGGGATTTGTTATTGGGAGGACCATCTGACATTGAGCCTTTAAATCTAATAGGTACTGATAACCCTGCATTGGAGCAATCTGGGAAGTATAATTTCGGTGATTTTTCATTTACTACCATGTCTTGGACTGGTTATGAAGTTGAGACGCCAGGAATGAAGGAAGAAAAGAAAGAACAACTTGAGGGAATCACGGATTACAGTGGTCATCATGGCTTCTACGATAAGCATAGTCACTTCCGAGCATTCGAAGAAACAATTAACAGTAAAGGTTCTGAGGCAATCAATACTGATAAATCATGGACACAAGAAGGGAACTATGATGATGATCAACTCCTGTTGCCTTTAGAAGGTCACATGCAGTTTGGGAGACCATCTGATTGCTGCCCCCAGTCTCAAAACCCAGATGCCCAACCGCTCAGAGAATTGCACCACATTGGGGAGACAGATGCCAGTGTGGATTACAAACTGGATTCCTTGGAACCTGAAAGCTCTCTTGACTTCAATGATCCAAAATTATAG 1098 0.439 MGSCGKKSRGRRRLWLGSFSTAEEAARAYDEAARAMYGSSARLNFPEDSQQSVEFSQDSTSTTTSTSPPKSIERPNKFGTSFAEESSVEPECPVVCPKDNNSTPSDEVEVETPMDEENCENATDTGGCYGSGNELEYFQNLLTQETYDFGQLPIVTSPSNDVEFKTPIIWQANNEELEESPENSDHHGFNKGFWDLLLGGPSDIEPLNLIGTDNPALEQSGKYNFGDFSFTTMSWTGYEVETPGMKEEKKEQLEGITDYSGHHGFYDKHSHFRAFEETINSKGSEAINTDKSWTQEGNYDDDQLLLPLEGHMQFGRPSDCCPQSQNPDAQPLRELHHIGETDASVDYKLDSLEPESSLDFNDPKL* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0367 365 MobiDBLite consensus disorder prediction 43 74 - -
Vvi8g0367 365 MobiDBLite consensus disorder prediction 43 122 - -
Vvi8g0367 365 SUPERFAMILY DNA-binding domain 9 47 IPR016177 GO:0003677
Vvi8g0367 365 CDD AP2 10 48 IPR001471 GO:0003700|GO:0006355
Vvi8g0367 365 Pfam AP2 domain 8 38 IPR001471 GO:0003700|GO:0006355
Vvi8g0367 365 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 9 304 - -
Vvi8g0367 365 ProSiteProfiles AP2/ERF domain profile. 1 46 IPR001471 GO:0003700|GO:0006355
Vvi8g0367 365 SMART rav1_2 1 52 IPR001471 GO:0003700|GO:0006355
Vvi8g0367 365 Gene3D AP2/ERF domain 3 47 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0367 Vvi-Chr8 9604906 9607715 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0367 13 72 AP2-EREBP Transcription Factor Family AT3G11020 58.065 4.29e-12 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vvi8g0367 AP2 1.6e-06 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0367 - K09286 vvi:100253373 717.613