Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0360 ATGATCGCCGGCTCAATTGCGGGCTCCGTCGAACACATGGCCATGTTTCCAGTAGATACCCTCAAGACCCGTATGCAGGTTATTGGCGGGTCGTATCCGGCTCCGTCCATCGGTCTCCGGCAAGTCCTTGGCTCCATTTTGAAGATGGAGGGGCCCGCCGGCCTCTACCGCGGCATTGCTGCAATGGGTCTCGGCGCCGGACCTTCCCATGCCGTGTATTTTTCGGTGTATGAGCTCTGTAAAGATTTTTTCTCGGCCGGAAATCCAAATAATTCTGCTGCCCACGCGGTTTCGGGAGTTTTCGCTACTGTTGCGAGCGATGCTGTGATTACACCAATGGATATGGTGAAGCAGAGGTTGCAATTGAAGAGTAGCCCATATAAGGGCGTGATGGATTGTGTGAAGAGAGTGTTGATGGAAGAGGGAATTCAAGCTTTTTACGCATCATATCGCACTACTGTTGTGATGAATGCGCCGTTCACCGCAGTTCATTTTGCGACTTATGAGGCCGCAAAGAGGGGGCTGATGGAGGTCTCTCCGGAGAATGCAGATGATGAGAATTTAGTGGTTCATGCCACTGCCGGAGCCGTGGCTGGGGCTTTAGCTGCAGCTGTTACAACTCCACTTGATGTTGTCAAAACTCAGTTGCAGTGCCAGATATGCTGGCATGACTAA 675 0.52 MIAGSIAGSVEHMAMFPVDTLKTRMQVIGGSYPAPSIGLRQVLGSILKMEGPAGLYRGIAAMGLGAGPSHAVYFSVYELCKDFFSAGNPNNSAAHAVSGVFATVASDAVITPMDMVKQRLQLKSSPYKGVMDCVKRVLMEEGIQAFYASYRTTVVMNAPFTAVHFATYEAAKRGLMEVSPENADDENLVVHATAGAVAGALAAAVTTPLDVVKTQLQCQICWHD* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0360 224 ProSiteProfiles Solute carrier (Solcar) repeat profile. 186 224 IPR018108 -
Vvi8g0360 224 ProSiteProfiles Solute carrier (Solcar) repeat profile. 1 83 IPR018108 -
Vvi8g0360 224 PRINTS Mitochondrial carrier protein signature 13 27 IPR002067 GO:0055085
Vvi8g0360 224 PRINTS Mitochondrial carrier protein signature 195 217 IPR002067 GO:0055085
Vvi8g0360 224 PRINTS Mitochondrial carrier protein signature 58 78 IPR002067 GO:0055085
Vvi8g0360 224 PRINTS Mitochondrial carrier protein signature 147 165 IPR002067 GO:0055085
Vvi8g0360 224 PRINTS Mitochondrial carrier protein signature 105 123 IPR002067 GO:0055085
Vvi8g0360 224 ProSiteProfiles Solute carrier (Solcar) repeat profile. 90 174 IPR018108 -
Vvi8g0360 224 SUPERFAMILY Mitochondrial carrier 1 221 IPR023395 -
Vvi8g0360 224 Pfam Mitochondrial carrier protein 186 219 IPR018108 -
Vvi8g0360 224 Pfam Mitochondrial carrier protein 1 85 IPR018108 -
Vvi8g0360 224 Pfam Mitochondrial carrier protein 91 177 IPR018108 -
Vvi8g0360 224 Gene3D Mitochondrial carrier domain 1 222 IPR023395 -
Vvi8g0360 224 PANTHER MITOFERRIN-1-RELATED 1 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0360 Vvi-Chr8 9434532 9436325 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0360 17 94 Chloroplast and Mitochondria Gene Families AT1G07030 35.000 5.94e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0360 K15113 - vvi:100249984 411.379