Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0345 ATGGTAGAAAGAGGAATAAAGAATAAACACCCACATCTAACAAGCTTCCAAGAAAGGAAGAAGGCTGAGCTGGGGAACCTAGCGGGGATGGAATTCTGTGGAAAGAGGGTTGAAAGTGATGGGTGGCTTCATTTTTTCTTTGTATATTATCATCTTGGTGTAATCTTTGTCGCTACCTCATTTCACCAATTTATATACAAGCACTCGTATAAGACTTTTTCATCAAAACTCCAGTCTTCTTGCCCTGTAAATTTTATCAAAAAGATGAACCAACCTGAGAAATTTCAGCCCTCATGGCCATTCTACAACATCTTGGATTCAACTCTTGATCAAGTTGAATTATATGGTTTCGACATTGACGAGGATGTGTGTGGCTATGAATTCTCTTCCTCAATCACCACCACAGAGGACTCCTCTGGGATTCCCTCAGCACCAGATTTTCCAACTGTGATTTCCAGTGAATTTGTTGGGTTTCCAGGCTGTGATGAGGCACTGCAAACCTCGTTTCTCATTGGGGATTTGCCACTCAATATGGAGGAGTTTGAGACTATTCTATGTGGTGAGATTGGAGATGCCTATGGATGGTTAGATGGGAGTGAGGAAAGTTTTCCTTCACAACAGCAGTCTACTGAAGGAGAAGATGAATGGAGTCCTTGCCCATCAACAAAATCTAGTGAGGCTTTGATCGACACAACATCAACGCAACAATCACTAACTTTTCCTGCAGAAGGTGTGGAAATTGATAACCAACAAAGCATTCTTCACCTACTCAAAGCTTACGGAGAAGCTGTTGAGGAGAATCAAAGGGAGCTCAGTGAGGTGATTTTGAGATCAATATGCGAGAAAGGAAATCCACTCGGTGAAACCCTAGAGCGTCTTGCATTCAACTTATTTGAAGACATCGAAAGGCAGGATGATTATCTTAAACAAGAATCCATGCAGAACTTTGCGGCAGCATTCAAAGCATTCTACCAAATATTTCCATATGGGAGGTTTGCTCACTTTGCAGCAAACTCAGCTATCCTTGAAGCTATGCCAGGTGATGTAGAAACGGTACACATCGTAGACTTTGATATGGGAGAAGGAGTTCAATGGCCTCCAATGATTGAGGCCATTGGGAAGCAACACAAGGCAGTTAGATTGACATCAATAAAATGGGGGGAGGAGGACAGCTGCTCTGCTTCTGCTCAATGGAGGTTTGAGGAGACAAAGAGGTGGCTTTGCAATCATGCAAGATCCATGGGTCTGAATTTGACAGTAGAGGAGGTGAAAATTGAGGATTTGTTCATCTGGGAGAAGCAAGAACAGCCATGGAATCCCTTTTTGTAG 1329 0.4274 MVERGIKNKHPHLTSFQERKKAELGNLAGMEFCGKRVESDGWLHFFFVYYHLGVIFVATSFHQFIYKHSYKTFSSKLQSSCPVNFIKKMNQPEKFQPSWPFYNILDSTLDQVELYGFDIDEDVCGYEFSSSITTTEDSSGIPSAPDFPTVISSEFVGFPGCDEALQTSFLIGDLPLNMEEFETILCGEIGDAYGWLDGSEESFPSQQQSTEGEDEWSPCPSTKSSEALIDTTSTQQSLTFPAEGVEIDNQQSILHLLKAYGEAVEENQRELSEVILRSICEKGNPLGETLERLAFNLFEDIERQDDYLKQESMQNFAAAFKAFYQIFPYGRFAHFAANSAILEAMPGDVETVHIVDFDMGEGVQWPPMIEAIGKQHKAVRLTSIKWGEEDSCSASAQWRFEETKRWLCNHARSMGLNLTVEEVKIEDLFIWEKQEQPWNPFL* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0345 442 MobiDBLite consensus disorder prediction 197 225 - -
Vvi8g0345 442 MobiDBLite consensus disorder prediction 200 225 - -
Vvi8g0345 442 ProSiteProfiles GRAS family profile. 244 442 IPR005202 -
Vvi8g0345 442 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 218 423 IPR005202 -
Vvi8g0345 442 Pfam GRAS domain family 254 423 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0345 Vvi-Chr8 9227520 9229146 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0345 245 384 GRAS Transcription Factor Family AT2G01570 30.128 5.91e-15 75.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vvi8g0345 GRAS 4.3e-27 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0345 - - vvi:104880018 880.167