Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0344 ATGATGCAGCCTGATGAACTTCTTCAGTTCTCATGGCCATGCTTCAACGATACAGTTTCATGTCTTGATGAAATTGCAGTTTATGGATCAGGCATTGATGCAGACATGGAGTCCGGGTTCTCCCTTTTCAACACAATTAAGGACAGTCCTGACCTTGAATTCATCCCATATTCTCCAACAACGTTGTCTGATGAGTACATGGGTTTTCCCATTCATATTGATGAGGTTCAACATACACTACCGAGTGATGTTTCTTCACTAAATTTGGAGGAGTTTGAGACCATTTTGAGCAATGATACTGAGGATATGTTTGGATGGTTGGAGGAGAGAGAGAAAAGTTATCCTTCTAAACAACCCTCTGTTGAAGGAGACGACAACTGGAGCTTTAGCCCATCCATGAAGTCAGCTGATGCATCTGTGGACATGGACTCGATTGAAGCTTTGTTAACCTTGCCTACAGAGGACGTGGAAATGGATAATCAACTGAGCATTGTTCATCTGGTCATGGCCTATGGAGAAGCTGTGGAGAAGGGAGAGGCAGAGCTTGCAGTTGTGTTGATGAACCGCATCCAGGAAAAAGTAAGCCCTGCTGGTGAGGTTGTGGAGCGGCTTTCATATTACTTATTCCAACCCACAGACAAGCAAACAAACTACCTCAGACAAGAGTTTGCCAAGAACTTCAATGTAGCCTTCAAAGCGTTTTACCAAATCTTCCCATATGGGAGGTTTGCTCACTTTGCAGCCAACTCGGCAGTCCTTGAGGCCATGCCTCACGATGCTGAGACCATACACATAGTTGACTTTGACATGGGAGAAGGGTTACAATGGTCTTCAATGATCGATGCCATAGGGCAACACCACCAAAAGACAGTAAGACTCACATCGATCAAGCGAAGGGAGGAGGGTTATGTTTATGCTGCTTCACAATGGAGATTCGAGGAGACAAAGAGGCATCTCTACAATCACGCCAGATCCGTTGGCCTAAAGCTGAAGAAGTGGGAGGAGATGAAGGGAGGTGACTCTAATGTTGACTCAATATTGGGGTTGGAGGGGTGGAGAGTGAGCCAAGAGAGCTTAATGGAAGCCAAACAGATGGTGAGAGAAGGGGAGAGTAAATATGGGGTGAAGATTGAAGGAAACAATATGAATGTGATGGTCTTAGAATGGAGAGGAGCCCCATTAGTGAGAGTTTCTGCTTGGAGGTAA 1206 0.4527 MMQPDELLQFSWPCFNDTVSCLDEIAVYGSGIDADMESGFSLFNTIKDSPDLEFIPYSPTTLSDEYMGFPIHIDEVQHTLPSDVSSLNLEEFETILSNDTEDMFGWLEEREKSYPSKQPSVEGDDNWSFSPSMKSADASVDMDSIEALLTLPTEDVEMDNQLSIVHLVMAYGEAVEKGEAELAVVLMNRIQEKVSPAGEVVERLSYYLFQPTDKQTNYLRQEFAKNFNVAFKAFYQIFPYGRFAHFAANSAVLEAMPHDAETIHIVDFDMGEGLQWSSMIDAIGQHHQKTVRLTSIKRREEGYVYAASQWRFEETKRHLYNHARSVGLKLKKWEEMKGGDSNVDSILGLEGWRVSQESLMEAKQMVREGESKYGVKIEGNNMNVMVLEWRGAPLVRVSAWR* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0344 401 ProSiteProfiles GRAS family profile. 155 401 IPR005202 -
Vvi8g0344 401 Pfam GRAS domain family 165 330 IPR005202 -
Vvi8g0344 401 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 148 330 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0344 Vvi-Chr8 9219561 9221151 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0344 159 296 GRAS Transcription Factor Family AT2G01570 32.450 7.40e-15 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vvi8g0344 GRAS 2.7e-27 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0344 - - vvi:100854695 668.307