Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0342 ATGATGCAGCCTGATGAGCTTCTTCAGTTCCCATGGCCATGCTTCAACGACATAGATTCATGTCTTGATGAAATTGCAGTTTATGGACTAGGCATTGATGCAGACATGGAGTCCGGGTTCTCCCTTTTCAACACAATTAAGGACAGTCCTGATGTTGAATTCATCCCATATCCTCCAACAACGTTGTCTGATGAGTACATGGATTTTCCCATTCATATTGATGAGGTTCAACATACACTACCGAATGATGTTTATTCACTAAATTTGGAGGAGTTTGAGACCATTTTGAGCAATGATACTGAGGATACGTTTGGATGGTTGGAGGAGAGACAGAAAAGTTATCCTTCTAAACAACCCTCTGTTGAAGGAGACGACAACTGGAGCTTTAGCCCATCCATGAAGTCAGCTGATGCATCTATGGACGTGGACTCGATTGAAGCTTTGTTAACCTTGCCTACAGAGGACGTGGAAATGGATAATGAACTGAGCATTGTTCATCTGGTCATGGCCTATGGAGAAGCTGTGGAGAAGGGAGAGGCAGAGCTTGCAGTTGTGTTGATGAACCGCATCCAGGAAAAAGTAAGCCCTGCTGGTGAGGTTGTGGAGCGGCTTTCATATTACTTATTCCAACCCACAGACAAGCAAACAAACTACCTCAGACAAGAGTCTGCCAAGAACTTCAATGTAGCCTTCAAAGCGTTCTACCAAATCTTCCCATATGGGAAGTTTGCTCACTTTGCAGCCAACTCGGCAATCCTTGAGGCCATGCCTCACGATGCTGAGACCATACACATAGTTGACTTCGACATGGGAGAAGGGTTACAATGGTCTTCAATGATCGATGCCATAGGGCAACACCACCAAAAGACAGTAAGACTCACATCGATCAAGCGAAGGGAGGAGGGTTATGTTTGTGCTGCTTCACAATGGAGATTCGAGGAGACAAAGAGGCATCTCTACAATCACGCCAGATCCGTTGGCCTAAAGCTGAAGGTAGAGGAGATGGAGCTGCAGGGGTTGATGAATGAGATAAAGAGAACGAAGAAAAAGGGTGGAAGAAGTGAATGGCTGGCTTTTAATTGTATGATGGGCCTTTCACACATGGGGAGTACCGGCAGAAGAAGGCAGGCTATGGAGTTCATGACGGTAGCCAAGGAACTAACTGTCCATTCTAAAAATAACAACAGGGGCATCATAACTTTCGGTGATGGAGATGGCTGGGAGAAACAGAAGAACACTTCGAGTTTTAGGTTATTCTTTAATGAATATTTAATACATTACCAAGCCCTGTTAGAATCAATGGAGTGGACCTTCCCAACTCATTTTGCAGAAGCAAGAATAGCCATGGAGTGTCTCTTTGTGGCACCTCATGTCTCATCTCTGGGTTGGTTCCAGAAGTGGGAGGAGATGAAGGGAGGTGACTCTAATGTTGACTCAATATTGGGGTTGGAGGGGTGGAGAGTGAGCCAAGAGAGCTTAATGGAAGCCAAACAGATGGTGAGAGAAGGGGAGAGTAAATATGGGGTGAAGATTGAAGGAAACAATATGAATATGATGGTCTTAGAATGGAGAGGAGCCCCATTAGTGAGAGTTTCTGCTTGGAGGTAA 1608 0.4502 MMQPDELLQFPWPCFNDIDSCLDEIAVYGLGIDADMESGFSLFNTIKDSPDVEFIPYPPTTLSDEYMDFPIHIDEVQHTLPNDVYSLNLEEFETILSNDTEDTFGWLEERQKSYPSKQPSVEGDDNWSFSPSMKSADASMDVDSIEALLTLPTEDVEMDNELSIVHLVMAYGEAVEKGEAELAVVLMNRIQEKVSPAGEVVERLSYYLFQPTDKQTNYLRQESAKNFNVAFKAFYQIFPYGKFAHFAANSAILEAMPHDAETIHIVDFDMGEGLQWSSMIDAIGQHHQKTVRLTSIKRREEGYVCAASQWRFEETKRHLYNHARSVGLKLKVEEMELQGLMNEIKRTKKKGGRSEWLAFNCMMGLSHMGSTGRRRQAMEFMTVAKELTVHSKNNNRGIITFGDGDGWEKQKNTSSFRLFFNEYLIHYQALLESMEWTFPTHFAEARIAMECLFVAPHVSSLGWFQKWEEMKGGDSNVDSILGLEGWRVSQESLMEAKQMVREGESKYGVKIEGNNMNMMVLEWRGAPLVRVSAWR* 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0342 535 Pfam GRAS domain family 165 535 IPR005202 -
Vvi8g0342 535 ProSiteProfiles GRAS family profile. 155 535 IPR005202 -
Vvi8g0342 535 Coils Coil 330 350 - -
Vvi8g0342 535 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 137 528 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0342 Vvi-Chr8 9152326 9153933 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0342 159 535 GRAS Transcription Factor Family AT2G01570 24.121 1.32e-16 80.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vvi8g0342 GRAS 4.1e-47 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0342 - - vri:117920608 992.26