Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0341 ATGTATGTTGGTTTTTCTGCATCCACGGGAGAAGAGAGGAGCTCTCATTACATATTGGGATGGAGTTTTTGCATCAATGGAACAGCTCGTCCGCTCAATCTTTCTATACTCCCAGTGCCACCAATTGAAACAGACTCATCCTCTCTGCATACTGGAATTAAGGTTTTAATTACGGGTTTAGCTGTGATCCTTTTAGTGTTTGGAGCATGGTTGATTCGTTTGTTGTATAGAAGGAAGATGAAGCCTGAAGATCTCGAAGATTGGGAGTTGGATTATCCTCACAGGTTCAGGTATAAGGATCTTTACACATCCACAAAAGGTTTCAAGGTCAGTGAGGTGATTGGAGTGGGTGGCTTCGCCACAGTGTACAAGGGTGTGTTACCTACAAATGGGAACGAAGTTGCAGTCAAGAAGATAGTCCAGAATTTAACTCATGGAATGAGGGAATTCGCTGCGGAAATCGAAAGCTTGGGAAGATTAAGGCACAAGAACCTGGTCAATCTTCAGGGATGGTGCAAGCACAAGAATGACCTCCTTCTTGTCTACGATTACATCCCGAATGGAAGTCTTGACTCTCTCCTCTTTCACCCCCCAGACAACTTTGTTTTGAGCTGGGATCAGAGATTCAAAATCCTCAGAGGCATCGCTGCTGGGCTGCTATATCTGCATGAAGAATGGGAGAAAGTGGTAATCCACCGCGACGTCAAGGCCAGTAATGTCCTCATAGACTCTGACATGAACGGCAGGCTTGGAGATTTCGGCCTTGCAAGGCTATATGATCACGGCAAAAACTCCCATACCACGAGCGTGGTTGGCACAATAGGGTATATTGCACCTGAGTTGACTCGCACTGGGAAGGCCTCCACATCCTCTGACGTGTTCGCATACGGGGTTCTACTCCTTGAAGTGGCCTGTGGGAAAAGGCCTATTCGCCCAGCCGATTCACAGTCTTCAGATCACTTCATATTGATGGACTGGGTGTTTGAATGCTATCAAGCGGGTCAAATTCTGGACGCAGTGGATCCAAGGATGAACTCAGTGTATGTTGTTGAAGAGGTGGAGCTGGTTTTGCGATTAGGCCTCTTCTGTAGTCACCCAAGACCAGAAGCCAGGCCTACCATGAGACAAGTGACGCGATATCTCAGTAGAGATGATCCGCTTCCTATCGTTGACGATTGGGCTGCCCCTGATTCTTCGCGGTTCAGCGATATAAGCCCAAGATTCTTACAAATTGTTTCAACAGATACAATCACAAGTTCTTGTCGTTCATCTTCAGTCGGCTACATCTCTTCCGGCTCCATACGAGCTGGCAGATAG 1317 0.47 MYVGFSASTGEERSSHYILGWSFCINGTARPLNLSILPVPPIETDSSSLHTGIKVLITGLAVILLVFGAWLIRLLYRRKMKPEDLEDWELDYPHRFRYKDLYTSTKGFKVSEVIGVGGFATVYKGVLPTNGNEVAVKKIVQNLTHGMREFAAEIESLGRLRHKNLVNLQGWCKHKNDLLLVYDYIPNGSLDSLLFHPPDNFVLSWDQRFKILRGIAAGLLYLHEEWEKVVIHRDVKASNVLIDSDMNGRLGDFGLARLYDHGKNSHTTSVVGTIGYIAPELTRTGKASTSSDVFAYGVLLLEVACGKRPIRPADSQSSDHFILMDWVFECYQAGQILDAVDPRMNSVYVVEEVELVLRLGLFCSHPRPEARPTMRQVTRYLSRDDPLPIVDDWAAPDSSRFSDISPRFLQIVSTDTITSSCRSSSVGYISSGSIRAGR* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0341 438 ProSitePatterns Protein kinases ATP-binding region signature. 114 138 IPR017441 GO:0005524
Vvi8g0341 438 Gene3D Phosphorylase Kinase; domain 1 79 184 - -
Vvi8g0341 438 SUPERFAMILY Protein kinase-like (PK-like) 91 406 IPR011009 -
Vvi8g0341 438 Pfam Protein kinase domain 108 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g0341 438 SMART serkin_6 108 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g0341 438 FunFam Lectin-domain containing receptor kinase VI.3 93 184 - -
Vvi8g0341 438 SUPERFAMILY Concanavalin A-like lectins/glucanases 1 129 IPR013320 -
Vvi8g0341 438 FunFam L-type lectin-domain containing receptor kinase S.4 185 393 - -
Vvi8g0341 438 Pfam Legume lectin domain 1 35 IPR001220 GO:0030246
Vvi8g0341 438 ProSitePatterns Serine/Threonine protein kinases active-site signature. 230 242 IPR008271 GO:0004672|GO:0006468
Vvi8g0341 438 PANTHER - 1 385 - -
Vvi8g0341 438 CDD STKc_IRAK 114 383 - -
Vvi8g0341 438 Gene3D Transferase(Phosphotransferase) domain 1 185 388 - -
Vvi8g0341 438 Gene3D - 1 49 - -
Vvi8g0341 438 ProSiteProfiles Protein kinase domain profile. 108 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0341 Vvi-Chr8 9147876 9149192 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0341 1 400 Receptor kinase-like Gene Family AT5G01560 55.961 8.17e-156 455
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vvi8g0341 Pkinase 3e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0341 - - vvi:100267833 866.3