Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0340 ATGTTTGCAGGCTTCTCTTCGGCCACCGGAAAGCTAGCAGGCTCACATTACATACTGGGATGGACTGTATGTTCTGCCACCACGCTCGTCTTGCTTGTGATTGTGGTGTTCATCTCCTTGTATTATTTGCAGAGGTTAAAGTACAAGGATGTTTTAGAGGAGTGGGAACTGCAATGCTCTCACAGATTTCCATACAGGGACTTGTTTAAAGCCACCAAAGGTTTCAAGGACAGCGAGATCCTTGGATCAGGGGGTTTTGGCTGTGTGTACAAGGGAGTGTTACCTGCAACCCAAGAAGAAGTCGCGGTCAAGAAAATCTCCCACAATTCAAGACAGGGGATCAGGGAATTCATAATGGAGATAGCGAGCCTAGGACGCATGAGACACAAGCATCTAGTACACCTCCATGGATGGTGCAAGCACAAAGATGAACTCCTCCTTGTTTATGACTTCATGCCCAATGGAAGCCTTGGGGACATTCTCTTCAACCACAAAAAGTCGGGGATTCTCAGTTGGGAGCAGAGATTCAGTATCTTGAAAGGAGTTGCTTCCGCACTATTATATCTTCACGAAGAATGGGAGCAGGTGGTTGTCCATAGAGATGTGAAAGCCAACAATGTGTTACTTGATGCAGACATGAATGCAAGACTGGGGGATTTCGGGCTTGCCAGGTTGTATGATCATGGGGAGGAAGCCTGCACCACACATATAGTAGGCACATTAGGATACATAGCACCAGAATTATCGCGAACAGGAAAGGCCACAACTCATTGTGATATGTTTTCATATGGCGCATTGCTCCTCGAAGTAGCTTGTGGAAGGCCGCCAATTGACCCAAATGCCTCATCCAAATGGGTATTACTGTTGGACTGGGTGAGGGAATGCTGGGCAGCAGGCTGTATAGTTGAGGCGGCTGATCCCAAGCTTGACAATGAATATGCGGTTGAGGAGATGGAACTAGCTTCAACATATTCCACGTATTCCATCGTAGGCAACAGCGTGGCATTATACCATCCACCTAGTAATTTAAAAAATGCCTACTCTGACAACACCCAGTTCATCTTTCAAGGGTTTAAAGGCACTTCCACCGCAAATTTGAGCCTCAATGGTGCTTCCATTATCACTTCAACTGACCCCGAAAGTGGTGGAGGTCACGGGTTCGCCTTTACTGACACCATGTATGTGGGCTTCTCTTCAGCCACGGGCAAGCTAGCAGACTCGCATTACATACTGGGGTGGAGGGGTTTTGGTTGTGTGTACAAGGGAGTGTTACCTACAACCAAAGAGGAGATCGCGGTCAAGAAAATCTCCCACAATTCCAGGCAGGGTATCAAGGAATTCATAATGGAGATAGCGAGTCTAGGACGGATGAAACACAAGCATCTAGAAAGGCCACAACTCATTGTGATGTGTTTTCATATGGCGCATTGCTCTTAG 1437 0.4704 MFAGFSSATGKLAGSHYILGWTVCSATTLVLLVIVVFISLYYLQRLKYKDVLEEWELQCSHRFPYRDLFKATKGFKDSEILGSGGFGCVYKGVLPATQEEVAVKKISHNSRQGIREFIMEIASLGRMRHKHLVHLHGWCKHKDELLLVYDFMPNGSLGDILFNHKKSGILSWEQRFSILKGVASALLYLHEEWEQVVVHRDVKANNVLLDADMNARLGDFGLARLYDHGEEACTTHIVGTLGYIAPELSRTGKATTHCDMFSYGALLLEVACGRPPIDPNASSKWVLLLDWVRECWAAGCIVEAADPKLDNEYAVEEMELASTYSTYSIVGNSVALYHPPSNLKNAYSDNTQFIFQGFKGTSTANLSLNGASIITSTDPESGGGHGFAFTDTMYVGFSSATGKLADSHYILGWRGFGCVYKGVLPTTKEEIAVKKISHNSRQGIKEFIMEIASLGRMKHKHLERPQLIVMCFHMAHCS* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0340 478 SMART serkin_6 75 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g0340 478 Pfam Protein kinase domain 75 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g0340 478 ProSitePatterns Serine/Threonine protein kinases active-site signature. 197 209 IPR008271 GO:0004672|GO:0006468
Vvi8g0340 478 SUPERFAMILY Protein kinase-like (PK-like) 60 318 IPR011009 -
Vvi8g0340 478 FunFam receptor-like protein kinase FERONIA 43 151 - -
Vvi8g0340 478 Gene3D Transferase(Phosphotransferase) domain 1 152 327 - -
Vvi8g0340 478 ProSitePatterns Protein kinases ATP-binding region signature. 81 105 IPR017441 GO:0005524
Vvi8g0340 478 Gene3D Phosphorylase Kinase; domain 1 392 477 - -
Vvi8g0340 478 Gene3D Phosphorylase Kinase; domain 1 60 151 - -
Vvi8g0340 478 SUPERFAMILY Concanavalin A-like lectins/glucanases 389 414 IPR013320 -
Vvi8g0340 478 SUPERFAMILY Protein kinase-like (PK-like) 408 462 IPR011009 -
Vvi8g0340 478 FunFam L-type lectin-domain containing receptor kinase S.4 152 326 - -
Vvi8g0340 478 SUPERFAMILY Concanavalin A-like lectins/glucanases 1 389 IPR013320 -
Vvi8g0340 478 ProSiteProfiles Protein kinase domain profile. 75 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g0340 478 PANTHER - 398 462 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0340 Vvi-Chr8 9110462 9117001 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0340 383 471 Receptor kinase-like Gene Family AT3G55550 42.697 1.95e-13 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vvi8g0340 Pkinase 1.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0340 - - vvi:100252418 629.787