Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0337 ATGGAGGAAAGCCACTGCGCAGAAGGTTCCAAGACAAGTCCTTCTGAACAGAATGAGGACGAGGATGAGAGCGAAGAGAATGATAGTGAAGGTAAGCATAAAAACTGTAGAAGCTCAAGCAACAGCACTGTTGAAGAGAATGAGAAGAAGGGGCATTCAGGAGCGGTACGACCATATGTTCGATCCAAGATGCCAAGACTCAGATGGACACCTGATCTCCACCTTCGTTTTGTTCATGCTGTTGAAAGACTCGGTGGACAAGAAAGAGCCACACCTAAGCTGGTTCTTCAACTGATGAACATCAAGGGACTTAACATTGCTCATGTCAAAAGCCATCTACAGATGTATCGAAGCAAGAAGATCGAAGATCCTGGTCAAGTACTGGCTGATCATCGGCATCTTGTGGAAAGTGGAGATCCAAATATTTACAACCTCAGCCAACTCCCCATGTTACAAGGACTCAATCAAAGACCTACTTCTAGTTTCAGATATGGAGATGCTTCATGGAGTGCCCATGAGAACTGGATGCACAGTCCTTTTATTGGCCGGAGTTCAGTTGATAAGACCACCAGACCAGGATTTTATGGTTCAGTCACTGAAAGGATATTTGGTGGCAACAATAACAATTCTACTAGTTGCAACTTCCATATGGGTACTTCTTTAAATGAATACTCTACTTGGGGAACCCATGTACGGAAAGATTCATTCCAGACCTCATTTCATGATCATGAATCCTGGCGAGGCCAAGCCGGATCAAGCCTGAAAGAGCTCAATCAGTTAACCCAAATGCAAGCGCATGTAAGAGAGCGCAGAGAACATATGAGTCTCAAGAGCAGGATCCCTTCAGATATGAACACAGCAACGAACCTACAGGAGTGGAGGACAGTGAAAAGGAAGGCTTCGGATTGTGACCTTGATTTGAATCTCTCTCTTAAGTTAACACCAAGGAATGATGAGACCGCTCGAGGTTTGGAGGATAATGAAGTCGACAGCTGCAATTTATCCCTGTCTTTGTACTCACCATCATCCTCAAAGCTTAGTAGGTTGAAGGAAGGGCGAGATGATAGTATGGAGCATGCAACAAGGGCAAGTACTCTTGATCTGACTATATGA 1113 0.4456 MEESHCAEGSKTSPSEQNEDEDESEENDSEGKHKNCRSSSNSTVEENEKKGHSGAVRPYVRSKMPRLRWTPDLHLRFVHAVERLGGQERATPKLVLQLMNIKGLNIAHVKSHLQMYRSKKIEDPGQVLADHRHLVESGDPNIYNLSQLPMLQGLNQRPTSSFRYGDASWSAHENWMHSPFIGRSSVDKTTRPGFYGSVTERIFGGNNNNSTSCNFHMGTSLNEYSTWGTHVRKDSFQTSFHDHESWRGQAGSSLKELNQLTQMQAHVRERREHMSLKSRIPSDMNTATNLQEWRTVKRKASDCDLDLNLSLKLTPRNDETARGLEDNEVDSCNLSLSLYSPSSSKLSRLKEGRDDSMEHATRASTLDLTI* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0337 370 Pfam Myb-like DNA-binding domain 67 117 IPR001005 -
Vvi8g0337 370 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 121 IPR017930 -
Vvi8g0337 370 MobiDBLite consensus disorder prediction 347 361 - -
Vvi8g0337 370 MobiDBLite consensus disorder prediction 1 17 - -
Vvi8g0337 370 NCBIfam myb-like DNA-binding domain, SHAQKYF class 65 120 IPR006447 GO:0003677
Vvi8g0337 370 MobiDBLite consensus disorder prediction 1 59 - -
Vvi8g0337 370 SUPERFAMILY Homeodomain-like 63 119 IPR009057 -
Vvi8g0337 370 Gene3D - 64 121 - -
Vvi8g0337 370 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 41 266 IPR046955 GO:0003700
Vvi8g0337 370 MobiDBLite consensus disorder prediction 343 370 - -
Vvi8g0337 370 FunFam Myb family transcription factor 63 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0337 Vvi-Chr8 9037688 9039224 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0337 56 122 G2-like Transcription Factor Family AT2G42660 80.597 1.02e-32 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vvi8g0337 Myb_DNA-binding 1.1e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0337 - - vvi:100265991 730.324