Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0330 ATGGCCTATAGACCATGGTCACGTGCGATGTTAGACCGAAGACTTTCACACGAATTCCGTATCCTCGGTCCTCTGTCACGGCCCTTGCAAACGAAGCTTCCTCCCCAAACACGCCTCCCACCCTCCGACCTCTGCCGCCGCCCCTTCAACCTTTTCACACCCCATCAACATTCGCATAGATATCAGGCCAGTTTTTCTGACTTGAAACTCATCATCAAACTCATAGCCATGGGAACAACAGGCGCCTACGACGCCCTCCTCCCAGCAGTCCCTGAATGGCTAAACAAGGGCGACAACGCATGGCAAATGACTGCATCCACCCTTGTGAGCATCCAAAGCGTTCCGGGCCTTGTCATCCTTTACGGAAGCATTGTGAAGAAGAAATGGGCTGTGAATTCAGCTTTCATGGCCCTCTACGCCTTCGCGGCCGTCCTCATTTGCTGGGTTCTTGTGTGCTACCGCATGGCCTTTGGTGACCAGCTCCTGCCTTTTTGGGGGAAGGGTGCCCCAGCTTTGGGCCAGAAGTACCTCATCCGCCAAGCGGCTGTGCCCGAGACCGGCAGCGAGCCTTTCTATCCCATGGCCACGCTTGTCTACTTTCAGTTCACTTTTGCGGCCATTACGCTTATCCTGCTTGCTGGGTCCGTTCTTGGTCGGATGAACATTAAGGCATGGATGGCCTTTGTGCCTCTTTGGCTCATCTTCTCCTACACTGTTGGCGCCTTCAGTCTTTGGGGTGGTGGCTTCCTCTACCAGTGGGGCGTCATCGATTACTCCGGAGGTTATGTCATCCACCTCTCTTCAGGAATTGCTGGTCTCACTGCAGCTTATTGGGTCGGACCCAGATTGAAGAGTGATAGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCAGTTCTCAACACAAACATATGTGCAGCAACCAGCCTCCTTGTATGGACTTCTTTGGATGTCATCTTCTTCAAGAAACCATCCGTGATCGGAGCTGTTCAGGGAATGATGACAGGCCTTGTTTGCATTACTCCAGGAGCAGGCGTAGTGCAATCTTGGGCGGCAATAGTGATGGGAATACTTTCCGGCAGCATTCCATGGGTGTCCATGATGATCCTTCATAAAAAGTCCAAATTACTACAAAAGGTTGACGACACACTAGGTGTATTTCACACGCATGCAGTGGCGGGACTGTTGGGTGGCCTCCTGACTGGACTCTTAGCAGAACCAGCGCTTTGCAGGCTCTTAAAACCAGAAAGCAATACGAGGGGTGCATTTTATGGTGGGAATGGTGGCAAGCAATTCATGAAGCAAATCGTTGCAGCCCTTTTTGTGATCGGTTGGAACATAGTAATCACCACACTGATTCTCCTAGCTATAAAGCTATTCCTACCTTTGAGGATGCCAGACGAGGAGCTGGTTATAGGAGATGATGCTGTCCATGGAGAGGAAGCGTATGCCCTTTGGGGTGACGGAGAGAGGTATGACCCAACAAAGCATGACCCAACAAAGCAAGATTGGCACGTGTCATCGTATTCTGGGGAAATAGCCCAATCCCCTTATGGCAGTGGTGCAAGAGGAGTAACTGTGGAGTTGTAA 1662 0.4832 MAYRPWSRAMLDRRLSHEFRILGPLSRPLQTKLPPQTRLPPSDLCRRPFNLFTPHQHSHRYQASFSDLKLIIKLIAMGTTGAYDALLPAVPEWLNKGDNAWQMTASTLVSIQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVLICWVLVCYRMAFGDQLLPFWGKGAPALGQKYLIRQAAVPETGSEPFYPMATLVYFQFTFAAITLILLAGSVLGRMNIKAWMAFVPLWLIFSYTVGAFSLWGGGFLYQWGVIDYSGGYVIHLSSGIAGLTAAYWVGPRLKSDRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVLNTNICAATSLLVWTSLDVIFFKKPSVIGAVQGMMTGLVCITPGAGVVQSWAAIVMGILSGSIPWVSMMILHKKSKLLQKVDDTLGVFHTHAVAGLLGGLLTGLLAEPALCRLLKPESNTRGAFYGGNGGKQFMKQIVAALFVIGWNIVITTLILLAIKLFLPLRMPDEELVIGDDAVHGEEAYALWGDGERYDPTKHDPTKQDWHVSSYSGEIAQSPYGSGARGVTVEL* 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0330 553 PANTHER AMMONIUM TRANSPORTER MEP2 88 288 IPR001905 GO:0008519|GO:0016020|GO:0072488
Vvi8g0330 553 Gene3D Ammonium transporter AmtB like domains 76 294 IPR029020 -
Vvi8g0330 553 FunFam Uncharacterized protein 312 510 - -
Vvi8g0330 553 Gene3D Ammonium transporter AmtB like domains 311 510 IPR029020 -
Vvi8g0330 553 ProSitePatterns Ammonium transporters signature. 257 282 IPR018047 GO:0008519|GO:0016020|GO:0072488
Vvi8g0330 553 Pfam Ammonium Transporter Family 100 285 IPR024041 GO:0008519|GO:0016020|GO:0072488
Vvi8g0330 553 Pfam Ammonium Transporter Family 321 507 IPR024041 GO:0008519|GO:0016020|GO:0072488
Vvi8g0330 553 SUPERFAMILY Ammonium transporter 93 489 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0330 Vvi-Chr8 8787199 8789821 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0330 194 553 Inorganic Solute Cotransporters AT2G38290 65.205 2.52e-163 467
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0330 K03320 - vvi:100250641 1001.5