LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi8g0329	ATGGCAGCTGCATCTGTTGTTCCGGTAGCATACCAGACATCGCTCCCCACTGTACCTGACTGGCTAAACAAGGGTGATAACACATGGCAGATGATCTCTGCCGCCCTGGTGGCCATGCAAGGCATGCCTGGACTGGTAATCCTGTATGCTGGCCTTGTCAAGAAGAAATGGGCACTCAACTCAGCCTTCATGGCCCTCTATGCCTTTGCCGCAGTCATGCCTTGTTGGGTCCTCTGGGCTTACAAGATGTCGTTTGGCCATCGCCTTCTACCTTTCTGGGGCAAAGCAGGCCTTGCCGTTTCCCAAGATTTCTTAATCCCCCGAGCTACTCTCCCCTCGACACGTTATGTAAATGGGGATTTTATAGCGCAAGCAGCTAGTCCATTGTACCCCATGGCTACCATGGTTTTCTTCCAGTTTGCTTTTGCTGCTGTGACTGTGATACTCCTTGCTGGGTCTGTGCTGGGTCGAATGAGCATCAAAGCTTGGATGGCCTTTGTACCACTATGGATTACTTTTTCTTACAGCATTGGCGCTTTCAGTATATGGGGCGGCGGTTTCCTCTTTCAATGGGGCATCATGGACTATTCCGGTGGTTATGTCGTCCATTTAGCTTCTGGTGCTGCAGGATTCACAGCAGCTTATTGGGTGGGACCGAGATTGCAGGTAGACCGGGAACAATTCCCACCAAACAATCTTCTACTGGCACTGGCTGGTGCTGGTATTCTTTGGATGGGGTGGACAGGTTTCAATGGAGGTGACCCTTTTGCTGCAAATGTCGATTCCTCCCTTGCAGTTCTCAATACTCATATATGCGCAACAACCAGTCTCCTTGTATGGACTTTCTGGGATACGTTTTTCTTCAAGAAGCCCTCAGCAATTGGCGCCATCCAGGGAATGATAACTGGGTTGGTCTGCATCACCCCTGGTGCAGGTCTTGTTCAGGGATGGGCTGCATTGATAATGGGCATTGCATCTGGAAGTGTCCCCTGGTACACCATGATGTGTCTTAGTAAGAAACTCCCCTTCCTGCAGAAGATTGATGACACCCTCGGTGTCTTCCATACTCATGCTGTGGCTGGAACCTTGGGTGGGGCTCTTACGGGACTCTTTGCTCATCCAGATCTCTCTGCCTTATTCATAGTGGTACCCAATTCCAGAGGGGCCTTCTATGGTGGTCGGGGCGGTGTCCAATTTCTGAAGCAGTTGGTTGGTGCAAGCTTCATAATAGGTTGGAATGTAATAGTTACATCCATCATCCTCCTGGTGATTAGCAAGTTTATACCCCTTCGTATGTCTGAGGAAGAGCTCATAATAGGGGATGATGCAGCGCATGGAGAAGAAGCTTATGCTCTTGCTGGACAAGGAGCAAGAGAAAAATCTACATACAATAATATGCAGCTGCAAAACGCCTCAGGCTTTGAGCTTTGA	1431	0.4955	MAAASVVPVAYQTSLPTVPDWLNKGDNTWQMISAALVAMQGMPGLVILYAGLVKKKWALNSAFMALYAFAAVMPCWVLWAYKMSFGHRLLPFWGKAGLAVSQDFLIPRATLPSTRYVNGDFIAQAASPLYPMATMVFFQFAFAAVTVILLAGSVLGRMSIKAWMAFVPLWITFSYSIGAFSIWGGGFLFQWGIMDYSGGYVVHLASGAAGFTAAYWVGPRLQVDREQFPPNNLLLALAGAGILWMGWTGFNGGDPFAANVDSSLAVLNTHICATTSLLVWTFWDTFFFKKPSAIGAIQGMITGLVCITPGAGLVQGWAALIMGIASGSVPWYTMMCLSKKLPFLQKIDDTLGVFHTHAVAGTLGGALTGLFAHPDLSALFIVVPNSRGAFYGGRGGVQFLKQLVGASFIIGWNVIVTSIILLVISKFIPLRMSEEELIIGDDAAHGEEAYALAGQGAREKSTYNNMQLQNASGFEL*	477

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi8g0329	476	FunFam	Ammonium transporter	10	453	-	-
	Vvi8g0329	476	NCBIfam	ammonium transporter	26	450	IPR001905	GO:0008519\|GO:0016020\|GO:0072488
	Vvi8g0329	476	ProSitePatterns	Ammonium transporters signature.	195	220	IPR018047	GO:0008519\|GO:0016020\|GO:0072488
	Vvi8g0329	476	PANTHER	AMMONIUM TRANSPORTER MEP2	14	461	IPR001905	GO:0008519\|GO:0016020\|GO:0072488
	Vvi8g0329	476	Pfam	Ammonium Transporter Family	29	450	IPR024041	GO:0008519\|GO:0016020\|GO:0072488
	Vvi8g0329	476	SUPERFAMILY	Ammonium transporter	21	432	-	-
	Vvi8g0329	476	PRINTS	Rhesus blood group protein signature	265	287	IPR002229	GO:0005886
	Vvi8g0329	476	PRINTS	Rhesus blood group protein signature	139	155	IPR002229	GO:0005886
	Vvi8g0329	476	PRINTS	Rhesus blood group protein signature	320	338	IPR002229	GO:0005886
	Vvi8g0329	476	PRINTS	Rhesus blood group protein signature	234	252	IPR002229	GO:0005886
	Vvi8g0329	476	Gene3D	Ammonium transporter AmtB like domains	3	455	IPR029020	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi8g0329	Vvi-Chr8	8774573	8776173	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi8g0329	132	470	Inorganic Solute Cotransporters	AT2G38290	69.027	4.57e-167	473

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi8g0329	K03320		-	vvi:100248822	912.138