Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0326 ATGGATTATCCCAGCAGCAGCAACCCCAGCTCCTCGCTGTCCTCTTCAGTGGCAAACATCGGCAAGGATAAGAAGAAGGGTGGGAAGAGAAGCAAAGGGGTGAAGCTCTCCACCGACCCACAGAGCGTGGCGGCCAGAGAGAGGAGGCACCGCATCAGTGACCGCTTCAAGATCTTGCAGAGCTTGGTTCCTGGTGGAACCAAGATGGACACTGTTTCCATGTTGGAGGAGGCTATTCACTATGTCAAGTACCTCAAGACCCAGATATGGCTTCACCAAACCATGATCAACTTCGTGGACGATGACCCGTCTCTGCTCTACCAGTCAGATTCTCTTCCTTCTCACCAACAAGAAGCTTTCTACTCACCTGATGAAACCTTAGCCATGATGCAACCTTACATAACCACTACAGCGCCGGTACGAGATTCTTATTGCTTTCAAGGTGAAGAAACCATGTTTTCTGACGCGTCCGTGAACTACTATTAG 486 0.5021 MDYPSSSNPSSSLSSSVANIGKDKKKGGKRSKGVKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLEEAIHYVKYLKTQIWLHQTMINFVDDDPSLLYQSDSLPSHQQEAFYSPDETLAMMQPYITTTAPVRDSYCFQGEETMFSDASVNYY* 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0326 161 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 36 85 IPR011598 GO:0046983
Vvi8g0326 161 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 20 130 IPR045843 GO:0003700|GO:0006355
Vvi8g0326 161 FunFam Transcription factor LAX PANICLE 39 102 - -
Vvi8g0326 161 CDD bHLH_AtIND_like 37 96 - -
Vvi8g0326 161 SMART finulus 42 91 IPR011598 GO:0046983
Vvi8g0326 161 MobiDBLite consensus disorder prediction 1 48 - -
Vvi8g0326 161 Gene3D - 40 94 IPR036638 GO:0046983
Vvi8g0326 161 Pfam Helix-loop-helix DNA-binding domain 46 86 IPR011598 GO:0046983
Vvi8g0326 161 MobiDBLite consensus disorder prediction 1 19 - -
Vvi8g0326 161 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 41 96 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0326 Vvi-Chr8 8753833 8754318 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0326 30 124 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 45.192 5.19e-23 91.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi8g0326 HLH 6.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0326 - - vvi:104880030 297.745