Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0308 ATGGCCGAAATGGATTGCGAACCCACTTCTAAAGAAGGAGAAGGGCAGGGGAAGCCCATTGTGGTATTGCTAATGGGTGCACCAGGTAGTGGCAAGTCCACCTTCTGCGAACATGTCATCCGATCCTCCACTCGACCCTGGGTTCGAGTCTGTCAGGACACCATTGGAAATGGTAAAGCTGGAACAAAATCTCAGTGCCTAAAGAGTGCAACAAGTGCATTGGAGGATGGCAAAAGTGTATTTATTGACAGATGCAATCTAGACAGGGAGCAGCGGGCAGAGTTTGTGAAGCTTGGCAGTCCCCAAGTTGAAATGCATGCTGTGGTGCTTGATCTTCCTGCCCAGCTTTGTATTTCTCGCTCTGTAAAGCGGACTGGACATGAAGGAAATTTGCAAGGGGGAAAAGCTGCTGCAGTAGTGAACAGAATGCTACAGAAGAAAGAATTGCCTAAATTGAGTGAAGGGTTCCACCGAATCACATTTTGCCAAAACGACAGTGATGTTCAAACTGCCCTCAACACTTATAGTGCACTTAGTCATCTTGATACTCTTCCACCTGGCTGTTTTGGCCAGAAGAACCCAGATGCCAAAATACAGCTAGGTATAATGAAATTCCTAAAGAAAGTAGAGGTCCCTGTTAATGTAGGACCTGATGCAAATTTCCCTAAGCATCCTCTTTCTACTCAAATTACTAAAGCAAAGGATTCTTGCTGCAAACAACCAGAAGACATTTCCTCTTCATCTGGCAATGCTAAGGAAATAAAGGGTGGTGAAGACATAGTGGTACACTCTGTTGATGGAACTGTTTCTTCAAAAGATATTCCCACTTTAGCATTTCCATCTATTTCAACAGCAGATTTCCAATTTAACCATGAAAAAGCAGCTGATATTATTCTTGAGAAGGTTGAGGAATTTGTGAATAAGGTTGAAAATGCCAGGCTTGTTTTGGTAGACTTGTCTCATGGATCAAAGATTTTGTCTTTGGTTAGGGCTAAAGCTGCACAGAGAAATATTGACTCAAACAAGTTCTTTACATTTGTTGGAGATATAACTAGACTTTATTCAAAAGGAGGTCTGCGCTGCAATGCAATAGCTAATGCTGCCAACTGGAGATTGAAACCTGGAGGTGGAGGTGCAAACGCTGCAATATTTAGTGCTGCAGGTCCAGAACTAGAGGTTGAAACCAAGAAGCGAGCCGGATCTCTTATCCCTGGAAAAGCTTTGGTTGTCCCTCTTCCTTCAACTTCACCCTTGTTTAGCAGGGAAGGAGTAACGCATGTCATACATGTTCTTGGACCAAATATGAATCGACAAAGACCAAACTGTCTCAACAATGACTATGTCAAAGGCAGCAAAGTTCTTCGTGAGGCTTACACATCACTCTTTGAAGGTTTTGCATCTATAATGAATACCCAAGGAAATTTACTTGAGGGAAGCAGTGAAAACCTTAGGTCAGAGCTATCAGTATCACAAGATCACTTCAAGGGAAATCATATAAAAAATGTTCCAAATCACGATCAGAAGATCAAGAGAGTGGGGGTTTATGAATCCGAGACAAGCAAAAAGTGCAAGGGATTTCAGGATGAACATGAATTTGATTGTACTGAATCCAAGGAAGGCAAGGACAAGTTGAACAATGAAAAGATTGGTAGAAACATGACCAAGACCTGGGGTTCATGGGCTCAATCTCTTTACCACATTGCTATGCATCCTGAGAAGCATAAAGACAATTTGATAGAGATATCAGATGATGTTGTTGTATTGAATGACCTCTATCCAAAGGCACAAAGACACCTTCTGGTTCTGGCCCGATCTGAAGGTCTCGATTGTCTGGCAGATGTTGGTGGAGAACACCTTCAGTTATTGAGGACAATGCATGCTGTGGGTTTAAAGTGGGCTGAGAAGTTCTTATGTGAAGATGAATTGTTGGTCTTCCGCATTGGATACCATTCTGCACCATCAATGCGACAACTGCATCTACATGTTATCAGCCAGGATTTCAATTCCAAACATCTGAAGAATAAGAAACACTGGAACTCATTCAATTCTGCTTTCTTTCGTGATTCAGTAGATGTAATTGAAGAAATCACTAATCATGGAAGAGCAACAATAAAAGGTGAGGACAGCCAATTATCAATGGAGTTACGTTGCCATCGTTGTAGAAGTGCCCACCCTAACATGCCCCGGCTGAAATCGCACATCAGCAATTGCCAAGCCTCCTTTCCTCCATCTCTACTCCAAAATGACCGTCTTGTACTTGCACCCAGTAAATCAGGCAGTGAACCCTAG 2289 0.4264 MAEMDCEPTSKEGEGQGKPIVVLLMGAPGSGKSTFCEHVIRSSTRPWVRVCQDTIGNGKAGTKSQCLKSATSALEDGKSVFIDRCNLDREQRAEFVKLGSPQVEMHAVVLDLPAQLCISRSVKRTGHEGNLQGGKAAAVVNRMLQKKELPKLSEGFHRITFCQNDSDVQTALNTYSALSHLDTLPPGCFGQKNPDAKIQLGIMKFLKKVEVPVNVGPDANFPKHPLSTQITKAKDSCCKQPEDISSSSGNAKEIKGGEDIVVHSVDGTVSSKDIPTLAFPSISTADFQFNHEKAADIILEKVEEFVNKVENARLVLVDLSHGSKILSLVRAKAAQRNIDSNKFFTFVGDITRLYSKGGLRCNAIANAANWRLKPGGGGANAAIFSAAGPELEVETKKRAGSLIPGKALVVPLPSTSPLFSREGVTHVIHVLGPNMNRQRPNCLNNDYVKGSKVLREAYTSLFEGFASIMNTQGNLLEGSSENLRSELSVSQDHFKGNHIKNVPNHDQKIKRVGVYESETSKKCKGFQDEHEFDCTESKEGKDKLNNEKIGRNMTKTWGSWAQSLYHIAMHPEKHKDNLIEISDDVVVLNDLYPKAQRHLLVLARSEGLDCLADVGGEHLQLLRTMHAVGLKWAEKFLCEDELLVFRIGYHSAPSMRQLHLHVISQDFNSKHLKNKKHWNSFNSAFFRDSVDVIEEITNHGRATIKGEDSQLSMELRCHRCRSAHPNMPRLKSHISNCQASFPPSLLQNDRLVLAPSKSGSEP* 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0308 762 Gene3D Leucine Aminopeptidase, subunit E, domain 1 324 469 IPR043472 -
Vvi8g0308 762 Pfam C2HE / C2H2 / C2HC zinc-binding finger 682 735 IPR032566 -
Vvi8g0308 762 Pfam Scavenger mRNA decapping enzyme C-term binding 566 677 - -
Vvi8g0308 762 SUPERFAMILY Macro domain-like 269 318 IPR043472 -
Vvi8g0308 762 ProSiteProfiles Macro domain profile. 330 523 IPR002589 -
Vvi8g0308 762 SUPERFAMILY HIT-like 549 721 IPR036265 -
Vvi8g0308 762 FunFam aprataxin isoform X2 558 738 - -
Vvi8g0308 762 Pfam Macro domain 365 438 IPR002589 -
Vvi8g0308 762 SUPERFAMILY Macro domain-like 333 463 IPR043472 -
Vvi8g0308 762 ProSitePatterns HIT domain signature. 646 664 IPR019808 -
Vvi8g0308 762 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 17 165 IPR027417 -
Vvi8g0308 762 FunFam Transcription factor bHLH140 7 177 - -
Vvi8g0308 762 FunFam Transcription factor bHLH140 324 470 - -
Vvi8g0308 762 FunFam Predicted protein 258 323 - -
Vvi8g0308 762 Pfam AAA domain 21 146 - -
Vvi8g0308 762 Gene3D - 559 741 IPR036265 -
Vvi8g0308 762 Gene3D - 2 177 IPR027417 -
Vvi8g0308 762 Gene3D Leucine Aminopeptidase, subunit E, domain 1 261 323 IPR043472 -
Vvi8g0308 762 PANTHER APRATAXIN-RELATED 277 737 - -
Vvi8g0308 762 SMART YBR022w_8 342 486 IPR002589 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0308 8 752 C2H2 Transcription Factor Family AT5G01310 59.572 0.0 877
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0308 K10863 - vvi:100259037 1533.47