Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0281 ATGCCTGGAGGCCTTGGGTCGGTCAGTGCCAATATGGGTTCTTCTCGTTCTGATGGCTCCGGAAAAGAACGCTTGCGCTGGACACAGGAACTACATGATCGGTTTGAAGAGGCTGTTAATCAGCTTGGTGGTGCCGATAGAGCAACTCCAAAGGGAATCTTAAAGGCTATGGCTGTTCCCGGACTAACCATTTACCATGTTAAAAGCCACCTGCAGAAATACAGAATATCAAAGTTTGTACCAGAATCATCCAGTAGAGCCAAGTTTGAGAGGAGAAGCATTTCAGAAATGTTGCCTAATTTCAGTACAACTTCGGGTGCTCAGCTTAAGGAAGCATTACAAATGCACATGGAAGTAGAAAGGCGTTTGAGCGATCAACTTGAGAAGAGCTTGAAGCTGAAAATCGAAGCCCAGGGAAGATTTTTTGAGAGAATTGCAGAAGAACAACGCAACTGGGTGAGCATCATGAAACCCACCAACCTCTTCTCCCCCACATCACTGCCTTCCCTCTGCGAAGAGTCTGAGTCAAATGCAAAGGAATCCGATTCTGATTCAGATTCCAACAAGACCGACATGCAATATGAAGGATTTCAAGCGAAGAAGCCTAGACTAATGGATGATCACATTTACCCTCCAAGGTTCAAACATGCATCACCCAGTTCGGGATCCCACGATCCAACCACCATGCTTCTTCCAAAGGATAATGTGAAACTTTCATATCCTCCTGCCCATGAAATCAGCTTTCCATGGAGTATCACTGCCTGCCCATCGCCTCTAGTCCCTGGGTTTTTATAG 795 0.4604 MPGGLGSVSANMGSSRSDGSGKERLRWTQELHDRFEEAVNQLGGADRATPKGILKAMAVPGLTIYHVKSHLQKYRISKFVPESSSRAKFERRSISEMLPNFSTTSGAQLKEALQMHMEVERRLSDQLEKSLKLKIEAQGRFFERIAEEQRNWVSIMKPTNLFSPTSLPSLCEESESNAKESDSDSDSNKTDMQYEGFQAKKPRLMDDHIYPPRFKHASPSSGSHDPTTMLLPKDNVKLSYPPAHEISFPWSITACPSPLVPGFL* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0281 264 MobiDBLite consensus disorder prediction 166 191 - -
Vvi8g0281 264 Coils Coil 109 129 - -
Vvi8g0281 264 MobiDBLite consensus disorder prediction 1 26 - -
Vvi8g0281 264 FunFam Myb family transcription factor 21 79 - -
Vvi8g0281 264 Pfam Myb-like DNA-binding domain 25 75 IPR001005 -
Vvi8g0281 264 Pfam MYB-CC type transfactor, LHEQLE motif 108 150 IPR025756 -
Vvi8g0281 264 SUPERFAMILY Homeodomain-like 21 76 IPR009057 -
Vvi8g0281 264 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 79 IPR017930 -
Vvi8g0281 264 Gene3D - 21 80 - -
Vvi8g0281 264 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 21 188 IPR044848 GO:0003700
Vvi8g0281 264 MobiDBLite consensus disorder prediction 175 189 - -
Vvi8g0281 264 NCBIfam myb-like DNA-binding domain, SHAQKYF class 22 77 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0281 Vvi-Chr8 7570995 7572625 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0281 14 149 G2-like Transcription Factor Family AT4G28610 49.640 1.08e-39 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vvi8g0281 Myb_DNA-binding 3.5e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0281 - - vvi:100243697 528.48