Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0280 ATGGAAATGGCTTCTATTTCTTCGAGTCCGAGGACTGTAGAGGAGATCTTCAAGGATTACAGCGGTCGTAGAGCTGGTGTTGTGCGTGCCTTAACCTACGATGTTGATGAATTCTACAAGCTCTGCGATCCAGAGAAAGAGAATTTGTGTCTGTATGGTCATCCAAATGATACTTGGGAAGTAACTCTTCCAGCAGAGGAAGTTCCTCCAGAGCTCCCTGAGCCAGCGCTTGGGATCAATTTTGCGAGAGATGGCATGAACCGCAAAGACTGGCTTTCACTGGTTGCTGTGCACAGTGATTCTTGGTTGCTCTCTGCAGCTTTCTATCTTGGTGCTCGCCTTAACCGCAATGAAAGGAAACGTCTATTTAGTATGATCAATGATCTGCCCACTGTCTTTGAAGTTGTAACAGAGAGGAAGCCTATAAAAGACAAGCCTAGTGTGGATAGTGGAAGCAAATCTCGAGTCAGCACAAAGAGGGGGAATGAAGGGCAAGTGAAAAGCACCCCGAAGCTGGCAGCAGATGAGAGCTTTGAGGAGGAGGAAGATGAACATAGTGAAACCCTCTGTGGGAGCTGTGGTGGGAACTACAATGCTGATGAGTTCTGGATTGGGTGCGACATCTGTGAGAGGTGGTTCCATGGAAAGTGTGTGAAGATAACACCTGCCAAGGCTGAGAGCATTAAGCAATATAAGTGTCCATCTTGCAGCTTAAAGAGGAGCAGGCAGTAG 732 0.474 MEMASISSSPRTVEEIFKDYSGRRAGVVRALTYDVDEFYKLCDPEKENLCLYGHPNDTWEVTLPAEEVPPELPEPALGINFARDGMNRKDWLSLVAVHSDSWLLSAAFYLGARLNRNERKRLFSMINDLPTVFEVVTERKPIKDKPSVDSGSKSRVSTKRGNEGQVKSTPKLAADESFEEEEDEHSETLCGSCGGNYNADEFWIGCDICERWFHGKCVKITPAKAESIKQYKCPSCSLKRSRQ* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0280 243 PANTHER CPG BINDING PROTEIN 9 243 IPR045104 GO:0006355|GO:0042393
Vvi8g0280 243 SUPERFAMILY FYVE/PHD zinc finger 178 240 IPR011011 -
Vvi8g0280 243 FunFam PHD finger alfin-like protein 182 238 - -
Vvi8g0280 243 CDD PHD_AL_plant 189 239 IPR044104 -
Vvi8g0280 243 Pfam Alfin 12 137 IPR021998 GO:0006355|GO:0042393
Vvi8g0280 243 ProSiteProfiles Zinc finger PHD-type profile. 187 239 IPR019787 -
Vvi8g0280 243 MobiDBLite consensus disorder prediction 151 165 - -
Vvi8g0280 243 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 187 237 IPR013083 -
Vvi8g0280 243 MobiDBLite consensus disorder prediction 143 178 - -
Vvi8g0280 243 ProSitePatterns Zinc finger PHD-type signature. 190 236 IPR019786 -
Vvi8g0280 243 Pfam PHD-finger 190 237 IPR019787 -
Vvi8g0280 243 SMART PHD_3 189 237 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0280 Vvi-Chr8 7561926 7570092 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0280 3 243 Alfin-like Transcription Factor Family AT5G05610 78.926 3.14e-126 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Vvi8g0280 Alfin 1.1e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0280 - - vvi:100259069 489.96