Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0279 ATGGGGGTGGACTACTACAAGATTCTTCAAGTAGATAGAAGCGCCAAAGACGATGACTTAAAGAAAGCTTATCGAAAACTCGCTATGAAATGGCATCCTGACAAAAACCCTAACAACAAGAAAGAGGCCGAGGCCAAATTCAAGCAAATCTCCGAGGCCTATGACGTTTTGAGTGATCCACAGAAGAGGGCGGTGTATGATCAATACGGAGAGGAGGGGCTCAAGGGCCAGGTGCCGCCTCCGGGTGCCGGTGGGTTTTCCGGCGGGTCGGATGGAGGTCCAACGATGTTCCGGTTCAATCCGAGGAGTGCCGACGATATATTTTCAGAGTTTTTCGGGTTTTCGAGTCCGTTCGGAGACATGGGCGGGTCGCGAGCCGGCGGGTCGGGATTTCCGAGAGGCATGTTCAGTGAAGATTTCTTTTCTTCGTTCAGGGGCGGTGCCGGGGAGGCTTCCTCGGCGACTATGCCGCGGAAAGGGGCGCCGATAGAGCGGGCATTACCGTGTAGCTTGGACGATTTATATAAGGGAACTAGTAAGAAGATGAAGATTTCGAGGGATGTTATTGATCACTTTGGGAGAACCACAACAACAGAAGAAATCCTTACTATTGAGATCAAGCCAGGTTGGAAGAAGGGGACAAAAATCACTTTCCCAGAAAAGGGAAATGAGCAGCGTGGTATTGTACCCTCAGATCTCATCTTTATAATCGATGAGAAGCCTCACCTTGTATTCAAGAGGGATGGCAATGATCTTATTTTCACCCAGAAGATATCTCTCGTGGAAGCTCTAACAGGTTACACAGTACAAGTTACTACTCTTGATGGGAGGACTCTGACGATCCCCATCAACTCGATCATCAGTCCCACCTATGAGGAAGTTGTTAAAGGGGAGGGGATGCCCATCCCCAAGGAACCCTCCAAAAAAGGGGGTTGA 936 0.4957 MGVDYYKILQVDRSAKDDDLKKAYRKLAMKWHPDKNPNNKKEAEAKFKQISEAYDVLSDPQKRAVYDQYGEEGLKGQVPPPGAGGFSGGSDGGPTMFRFNPRSADDIFSEFFGFSSPFGDMGGSRAGGSGFPRGMFSEDFFSSFRGGAGEASSATMPRKGAPIERALPCSLDDLYKGTSKKMKISRDVIDHFGRTTTTEEILTIEIKPGWKKGTKITFPEKGNEQRGIVPSDLIFIIDEKPHLVFKRDGNDLIFTQKISLVEALTGYTVQVTTLDGRTLTIPINSIISPTYEEVVKGEGMPIPKEPSKKGG* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0279 311 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Vvi8g0279 311 MobiDBLite consensus disorder prediction 72 95 - -
Vvi8g0279 311 Gene3D - 242 311 - -
Vvi8g0279 311 SUPERFAMILY Chaperone J-domain 3 97 IPR036869 -
Vvi8g0279 311 CDD DnaJ 4 59 IPR001623 -
Vvi8g0279 311 Pfam DnaJ C terminal domain 164 310 IPR002939 -
Vvi8g0279 311 SUPERFAMILY HSP40/DnaJ peptide-binding domain 163 242 IPR008971 GO:0006457|GO:0051082
Vvi8g0279 311 FunFam DnaJ subfamily B member 13 242 311 - -
Vvi8g0279 311 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Vvi8g0279 311 Pfam DnaJ domain 4 67 IPR001623 -
Vvi8g0279 311 CDD DnaJ_C 161 310 - -
Vvi8g0279 311 Gene3D DnaJ domain 3 123 IPR036869 -
Vvi8g0279 311 SUPERFAMILY HSP40/DnaJ peptide-binding domain 244 310 IPR008971 GO:0006457|GO:0051082
Vvi8g0279 311 PRINTS DnaJ domain signature 24 39 IPR001623 -
Vvi8g0279 311 PRINTS DnaJ domain signature 6 24 IPR001623 -
Vvi8g0279 311 PRINTS DnaJ domain signature 62 81 IPR001623 -
Vvi8g0279 311 PRINTS DnaJ domain signature 42 62 IPR001623 -
Vvi8g0279 311 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 310 - -
Vvi8g0279 311 FunFam Dnaj homolog subfamily b member 159 240 - -
Vvi8g0279 311 FunFam DnaJ subfamily B member 13 3 122 - -
Vvi8g0279 311 SMART dnaj_3 3 62 IPR001623 -
Vvi8g0279 311 Gene3D - 162 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0279 Vvi-Chr8 7542349 7557415 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0279 5 69 C2H2 Transcription Factor Family AT1G74250 37.681 1.04e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0279 K09510 - vvi:100253930 570.466