Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0269 ATGGCGACGTACTTTCATGGGAATTCAGAAATCCAAGCTGATGGGTTACAGACTCTCATTCTCATGAACCCTGCCTACGTTGGATACTCGGACGCGCCACCGCCCCCTCCGCTGCACCCCAATTTCGTCTTCCTCAATTCTGCCGCAGCTTCACTCGCTCCCTCCAACCTTTCCCACGCGCCGCCGCCTCAGACCCAGCAGTTCGTCTCCATCCCACTATCGGCCACTGCCCCCTCCGCCTCATCGGATCCCAGTCCTCCATCCGTGCACGCCCACCATGAGATCCCAGGGCTTCCTGGCTTCATCCAGCGCCCTCACTACAATCTCTGGAGCTCAATTGATACCACTGCGGCGGCGCGTGATACTCCACGCTCCCAGCAGGGTCTCTCCCTAAGCCTCTCTTCGCAACAACCGCCGGCCTATGGTTCCTACGGGAATGAGCGCGAGGTCCCTCCTCAGCATGCGACGGCGATATCACCGGTGAGCGACGACATGCGAATTTCGGGGGCGTCATCGTCGTCGGCGTCGGGAATTTCAAACGGAGTTTCGGGTATGCATGGTGTGATACTGAGTTCCAAGTACTTGAAAGCTGCTCAGCAACTACTGGACGAGGTTGTGAACGTGGGAAATGGAATTAAAACCGAAACACCATCTAAGAAGAGCAGCAGTGAGGCAACCAAGACTCTTGGGGAAGGCCTAATTGGAGGAGAAACAAGCACCAAACGCAGCGCCGACCTTTCAACTGCTGAGAGGCAAGAGATTCAGATGAAGAAAGCTAAGCTCCTCAACATGCTTGATGAGGTGGAGCAAAGATACCGGCAGTATCATCATCAGATGCAGATTGTGATTTCTTCATTCGAGCAAGCGGCAGGGATCGGGTCCGCCAAAACTTACACAGCCCTTGCGCTGCAGACCATCTCAAAGCAATTCAGATGTCTGAAAGACGCAATATCGGGGCAGATTCGAGCGGCAAACAAGAGTTTAGGGGAGGAAGATGGCACTGGAGGGAAGATTGAGGGTTCAAGACTCAAATTTGTTGATCATCAGCTTCGTCAGCAGCGGGCTCTTCAACAATTGGGAATGATCCAACAGAATGTTTGGAGACCCCAGAGAGGATTGCCTGAAAGATCTGTTTCTGTTCTTCGCGCTTGGCTCTTTGAACACTTCCTCCACCCTTATCCTAAGGATTCAGACAAGCACATGCTCGCCAAACAAACAGGGCTCACCCGGAGTCAGGTGTCTAACTGGTTCATAAATGCTCGGGTTCGTCTCTGGAAGCCAATGGTGGAAGAAATGTACATGGAGGAAGTCAAGGACCACGAAGAGAATGGATCAGGGGAGAAAACAAGCAAGAGCGAGGACAACAACCTGGAAGATTCAGCATTGAAGTCCAGTGGTCAGCAAGAGAAAAGCCCTGGTTCTGAGAACCAAGCTAGAAGTTTCAAATCCAAACCAGACAATCCCACGAACAAGAGTGCTCCTCCAGTGATCTCAATGGCCACAGCTGCAACATCTCCCATTGGAGGAGGAAATGCCCGGAACCAGCCCAGGTTCACGCTCATGGGGCCATCAGAAATGGAAGGGATGGCCCAAGGAAGTCCAAAGAAACCAAGGAGCACCGATGTCCTGCACTCCCCATCTAGTGTCCCATCCATGGACATGGATGTGAAGCCCGGTGAAGCAAATCACCACCACATTTCCATGAAGTTCAGCAATGAGAGGCAGGGCAGAGATGGCTATCCGCTAATGGCAGGCCCAACAAACTTCATTGGAGGATTCGAGTCGTACTCACTTGGGGAAATTGGACGGTTTGATGCCGAGCAGTTCACTCCAAGGTTTTCAGGCAATGGTGTTTCTCTCACCCTTGGTCTCCCACACTGTGAAAACCTCTCCTTATCAGGAACCCATCAAACTTTCCTCCCAAACCAAAACATTCAATTGGGAAGAAGAGTAGACATGGGTGAACCAAACGAGTATGGCACTATCAACACTACCACACCTCACTCTACAGCTGCATACGAGAACATCAACATGCAGAACGGGAAGAGGTTTGCAGCCCAGTTGTTGCCTGACTGTGGCCTGATCAGTTAA 2091 0.5198 MATYFHGNSEIQADGLQTLILMNPAYVGYSDAPPPPPLHPNFVFLNSAAASLAPSNLSHAPPPQTQQFVSIPLSATAPSASSDPSPPSVHAHHEIPGLPGFIQRPHYNLWSSIDTTAAARDTPRSQQGLSLSLSSQQPPAYGSYGNEREVPPQHATAISPVSDDMRISGASSSSASGISNGVSGMHGVILSSKYLKAAQQLLDEVVNVGNGIKTETPSKKSSSEATKTLGEGLIGGETSTKRSADLSTAERQEIQMKKAKLLNMLDEVEQRYRQYHHQMQIVISSFEQAAGIGSAKTYTALALQTISKQFRCLKDAISGQIRAANKSLGEEDGTGGKIEGSRLKFVDHQLRQQRALQQLGMIQQNVWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYMEEVKDHEENGSGEKTSKSEDNNLEDSALKSSGQQEKSPGSENQARSFKSKPDNPTNKSAPPVISMATAATSPIGGGNARNQPRFTLMGPSEMEGMAQGSPKKPRSTDVLHSPSSVPSMDMDVKPGEANHHHISMKFSNERQGRDGYPLMAGPTNFIGGFESYSLGEIGRFDAEQFTPRFSGNGVSLTLGLPHCENLSLSGTHQTFLPNQNIQLGRRVDMGEPNEYGTINTTTPHSTAAYENINMQNGKRFAAQLLPDCGLIS* 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0269 696 MobiDBLite consensus disorder prediction 459 512 - -
Vvi8g0269 696 SMART HOX_1 367 431 IPR001356 GO:0003677
Vvi8g0269 696 CDD homeodomain 367 428 IPR001356 GO:0003677
Vvi8g0269 696 SUPERFAMILY Homeodomain-like 369 434 IPR009057 -
Vvi8g0269 696 Gene3D - 370 448 - -
Vvi8g0269 696 MobiDBLite consensus disorder prediction 75 97 - -
Vvi8g0269 696 MobiDBLite consensus disorder prediction 437 458 - -
Vvi8g0269 696 MobiDBLite consensus disorder prediction 119 152 - -
Vvi8g0269 696 MobiDBLite consensus disorder prediction 212 228 - -
Vvi8g0269 696 SMART prehox3 183 319 IPR006563 -
Vvi8g0269 696 MobiDBLite consensus disorder prediction 119 142 - -
Vvi8g0269 696 Coils Coil 251 278 - -
Vvi8g0269 696 Pfam Homeobox KN domain 384 423 IPR008422 GO:0003677|GO:0006355
Vvi8g0269 696 Pfam Associated with HOX 188 318 IPR006563 -
Vvi8g0269 696 ProSiteProfiles 'Homeobox' domain profile. 364 427 IPR001356 GO:0003677
Vvi8g0269 696 MobiDBLite consensus disorder prediction 212 246 - -
Vvi8g0269 696 MobiDBLite consensus disorder prediction 437 551 - -
Vvi8g0269 696 FunFam BEL1-like homeodomain protein 9 370 432 - -
Vvi8g0269 696 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 91 463 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0269 Vvi-Chr8 7222194 7225065 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0269 1 691 Homeobox Transcription Factor Family AT2G35940 48.883 2.52e-177 520
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vvi8g0269 POX 4.4e-50 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0269 - - vvi:100255734 1303.89