Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0267 ATGGATGATGTTGAAATTCCTGAGTACTTCATCTGTCCCATATCGCTTCAGATCATGAGAGATCCAGTTACAGCCATAACTGGAATCACATACGATCGAGAGAGCATCGAAAACTGGCTGTTCAAAGGCAACAACACATGCCCAGTCACCAAACAACCATTACCCCCTGATTCTGACTTGACTCCCAATCACACCCTCCGGCGATTGATCCAATCTTGGTGCACTGAGAATGCTTCAAACGGCGTGGTTCGGATTCCCACTCCTAAGGCTCCTCTCACCAAGTCTCATGTTGTGAAGCTGGTGAAGGAGCTTTGGGTTCCTCAGTTGCAGCTCAAAACTCTGAGGAAGTTGGAGTTGCTTGCTATGGAGAATGAGAGAAACAGGAGGTATATGGTGGAAGCTGGGGTAATTAAAAGCATGTCGTCATTTCTTGTGGCTTGTTTCAATAAACAGCAGACTGTTGGCCTTGAAGAAGCTCTCAGCATTCTCTATCTGATTCGGGTTAATCCAACTTCCGAGACAAGGCTACTACCGATTGAAAATGATAGAATTATGGAAACTTTTACATGGATTTTGCAGTGCAAGATGGATGGTCACAGCAGTATTAAAGCACATGCGCTGTTGGTGTTGAAGGTAATGGTGAAAACAGCAAGCTCCACCCAGCTAGAGAGGCTAAAACCTGAGTTCTTGTCGAGTGTTGTAGGGGTGCTTAGGGAAGGGATCTCGCACCAGGGCATCAATGCCGCCTTGCACATCTTGCTAGACACGTGTCCGTGGGGAAGAAACCGAATGAGTATGATTGAATCCGGGGCAATTCATGACGTCATAGAGATTGAATTAGGAATGCCGGAGAGGAGGACGACGGAGCTGATTCTAGGGATATTGTTTCATCTATGCTCCTGCGCTGATGGTAGATCTCAGTTCCTAAGCCACAGTGGTGCAATTGCTGTGGTCTCCAACAGGATGCTCAATGTTTCCATAGCAGCCGACGATCGAGCCATTTTGATACTTTCTTTGATAAGCAAGTACTGCGGGACTTGTGTGGTACTTGAGGAGATGATCAGTGTTAGAGCTGTTTCTAAGCTTTGTGTGGTGCTCCAAGCTGACTACGCACATTATTTGAAAGAAAAAGCAAGGGAAATTCTAAGATCACACTACGATTTCTGGAAGAACTCTCCTTGTTTCATCTCTTCTCCCTTGTCAAAGATCCAATTAATTTGA 1221 0.4562 MDDVEIPEYFICPISLQIMRDPVTAITGITYDRESIENWLFKGNNTCPVTKQPLPPDSDLTPNHTLRRLIQSWCTENASNGVVRIPTPKAPLTKSHVVKLVKELWVPQLQLKTLRKLELLAMENERNRRYMVEAGVIKSMSSFLVACFNKQQTVGLEEALSILYLIRVNPTSETRLLPIENDRIMETFTWILQCKMDGHSSIKAHALLVLKVMVKTASSTQLERLKPEFLSSVVGVLREGISHQGINAALHILLDTCPWGRNRMSMIESGAIHDVIEIELGMPERRTTELILGILFHLCSCADGRSQFLSHSGAIAVVSNRMLNVSIAADDRAILILSLISKYCGTCVVLEEMISVRAVSKLCVVLQADYAHYLKEKAREILRSHYDFWKNSPCFISSPLSKIQLI* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0267 406 SUPERFAMILY RING/U-box 3 78 - -
Vvi8g0267 406 SMART Ubox_2 9 73 IPR003613 GO:0004842|GO:0016567
Vvi8g0267 406 Pfam U-box domain 6 77 IPR003613 GO:0004842|GO:0016567
Vvi8g0267 406 PANTHER WDSAM1 PROTEIN 3 395 IPR045185 GO:0061630
Vvi8g0267 406 Gene3D - 105 384 IPR011989 -
Vvi8g0267 406 ProSiteProfiles U-box domain profile. 5 80 IPR003613 GO:0004842|GO:0016567
Vvi8g0267 406 SUPERFAMILY ARM repeat 107 383 IPR016024 -
Vvi8g0267 406 CDD RING-Ubox_PUB 7 57 IPR045210 -
Vvi8g0267 406 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 80 IPR013083 -
Vvi8g0267 406 FunFam RING-type E3 ubiquitin transferase 1 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0267 Vvi-Chr8 7180841 7182061 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0267 2 403 U-box Gene Family AT3G11840 44.966 2.29e-121 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0267 - - vvi:100262692 799.275