Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0265 ATGGAAGAAATCGATGTTCCTCCATTTTTCCTCTGCCCGATTTCTTTGGAGATTATGAAAGATCCGGTGACGGTGTCAACGGGTATAACGTACGATCGGGAGAGCATCGAGAAGTGGTTGTTTTCCGGCAAAAATAACACCTGTCCTGCGACGAAACAGGTTCTGTCGGCGGACTCCGATCTGACTCCCAACCACACTCTCCGGCGGCTGATTCAGGCGTGGTGTACTCTCCATGCTTCAAACGGTGTAGAGCGTATTCCGACGCCCAAGATTCCGATCAACAAGATCCAGATCGTGAAGCTTCTCAATGATGCTAAGTCTCCACAGTTGCAGATGAAATGTATCGGAAAACTTCGAGCCCTTGCGGCTGAGAGCGACGCCAACAAGCGGTGCATTGAGTCCGCCGGTGCAGTTGAATTCTTAGCTTCAATAGTGAGCAAAGCCAACTTCACAACATTCGAAGAGGAATCAGATAAAGGGCTAGAGTCCAGGAGCGCGAGCAGTGAAGCTCTAAGCATTCTCCATTATCTCCTACTGTCAGAAGCCGGGCTCAAGAAGCTTGTGGGAAAAAATGGTGAATTTGTGGGTTGCTTGGTACGAGTACTACAACGAGGAAACTACGAGTCCCGAGCTTATGCTGTAATGCTATTGAGTTCGATGCTCCAAGTTGCTGATCCAATACAATTAATCGCCTTGAAACCCGAATTCTTCGTGGAAGCAGTGCAAGTTTTGCAGGATCATATATCTCACCAGGCCACAAAAGCTACACTCAAACTACTAATTGAGGTTTGTCCATGGGGGAGAAACAAGGTCAAAGCAGTGGAAGCCGGCGCAGTTTCGATATTGACAGAGCTTCTTCTCGCTTCTTCAGAAAAAAGGGCTTGTGAGATGATCCTAACGGTGTTGGATCAGCTATGCGGGTGCGCGGAAGGAAGAGCCGAACTGTTGAAGCATGCAGCCGGGATGGCTATAGTGTCAAAGAAGATACTGAGGGTTTCTCACGTGGCAAGTGAACGGGCAGTGAGAATTCTGTATTCCATTTCCAAGTTCTCTGCAACTCCAAGTGTTCTTCAAGAGATGTCGCAGCTGGGTGTTGTGGCGAAATTGTGTTTAGTGCTTCAAGTGGATTGTGGGAGCAGGACCAAGGAGAAAACCAGAGATATCCTCAGATTGCATGCCAGGGCATGGAAGAACTCTCCATGCATACCCACCAATTTGCTTTCTTCATATCCATAG 1236 0.4814 MEEIDVPPFFLCPISLEIMKDPVTVSTGITYDRESIEKWLFSGKNNTCPATKQVLSADSDLTPNHTLRRLIQAWCTLHASNGVERIPTPKIPINKIQIVKLLNDAKSPQLQMKCIGKLRALAAESDANKRCIESAGAVEFLASIVSKANFTTFEEESDKGLESRSASSEALSILHYLLLSEAGLKKLVGKNGEFVGCLVRVLQRGNYESRAYAVMLLSSMLQVADPIQLIALKPEFFVEAVQVLQDHISHQATKATLKLLIEVCPWGRNKVKAVEAGAVSILTELLLASSEKRACEMILTVLDQLCGCAEGRAELLKHAAGMAIVSKKILRVSHVASERAVRILYSISKFSATPSVLQEMSQLGVVAKLCLVLQVDCGSRTKEKTRDILRLHARAWKNSPCIPTNLLSSYP* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0265 411 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Vvi8g0265 411 SUPERFAMILY ARM repeat 98 379 IPR016024 -
Vvi8g0265 411 Pfam U-box domain 6 78 IPR003613 GO:0004842|GO:0016567
Vvi8g0265 411 PANTHER WDSAM1 PROTEIN 2 403 IPR045185 GO:0061630
Vvi8g0265 411 SUPERFAMILY RING/U-box 3 78 - -
Vvi8g0265 411 FunFam RING-type E3 ubiquitin transferase 1 84 - -
Vvi8g0265 411 Gene3D - 95 396 IPR011989 -
Vvi8g0265 411 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 85 IPR013083 -
Vvi8g0265 411 CDD RING-Ubox_PUB 7 58 IPR045210 -
Vvi8g0265 411 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0265 Vvi-Chr8 7114965 7116200 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0265 2 411 U-box Gene Family AT2G35930 58.173 5.80e-174 490
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0265 - - vvi:100266002 792.341