Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0261 ATGTCATCTTCCAAAAAATCCCAGTTGGCCTCTTCACAATTTCCTTGTACTTATTTATTCAAGATGGAATATAAAAAAGGTTTAGTTTTTATGTTATCGAGAGAACCGTGGATTCGCGGATCTGGGGTTATCTCTTGTTGGCGAAGCATAGATTTCGGCTCCCAAGAATGGAGGGATGGGCTGCATGTTCCTAATGCGGTGGGATGGGAGCTTAACAGTGGGAAGATTGGTGATGGTAGTAGCCCCAAGGAAAACGATAAATCTGTTGAGGAATTTCTTTTGGCTCCACTTCGTGCACTAGACAAGCTGCCTGTGAATCTCCATGCGCTACAGACTTGCAATGTTGGCAAGTCTGTGAATCATTTATGTAGTCATAAAAATTCTGAAATTAAGAAGAAAGCTAGAAGTTTAGTTGACACATGGAAGAAACCGAGTTGA 438 0.4155 MSSSKKSQLASSQFPCTYLFKMEYKKGLVFMLSREPWIRGSGVISCWRSIDFGSQEWRDGLHVPNAVGWELNSGKIGDGSSPKENDKSVEEFLLAPLRALDKLPVNLHALQTCNVGKSVNHLCSHKNSEIKKKARSLVDTWKKPS* 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0261 145 CDD TFIIS_I 74 143 - -
Vvi8g0261 145 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 79 144 IPR035441 -
Vvi8g0261 145 ProSiteProfiles TFIIS N-terminal domain profile. 68 145 IPR017923 -
Vvi8g0261 145 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 70 143 - -
Vvi8g0261 145 Pfam TFIIS helical bundle-like domain 97 144 IPR017923 -
Vvi8g0261 145 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 88 143 IPR035441 -
Vvi8g0261 145 SMART TFS2_5 68 145 IPR003617 GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0261 Vvi-Chr8 7101154 7101591 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Vvi8g0261 Med26 1.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0261 - - vvi:100252575 137.117