Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0254 ATGGGGAATAACTGTGTGGGATCCATGGTTCCCGAGCATGGATTGTTTGAATCAATTTCTAATTCAATTTGGTGGACGAGAGCCTCGGAGTGTATGACTTCTCATTCTACCGGAGAAGGTGTCAGCGAAACGCAAAGTAAAGAGCAGAAATCTCCTCCTCCTGTTCAAAACAAGCCTCCAGAAGAGGTGGAGCTAATAAATCCGCCAGAGGTAATGAAGATAACAAAGGAAGAGACGAAACCAACACCCACACCGAAGAGGCCACTCCTTATGAAGAGGTTACCAAGTGCTGGACTTGAGGTGGACTTGGTTTTGAAAGACAAAACTGATCATTTGAAGGAACACTATAATTTGGGGCGGAAGCTTGGGCACGGCCAGTTTGGGACAACTTTTCTATGTGTAGAGAAAGAAACAGGCAAAGAGTACGCTTGCAAATCCATTGCAAAAAGGAAACTGCTGACAAGAGATGACATTGAAGACGTGAGGAGGGAAATCCAGATAATGCATCACTTGGCGGGCCACTCCAATATCATCTCCATCAAGGGAGCTTATGAGGATGCGGTGGCAGTTCATCTTGTCATGGAATTGTGTACGGGGGGTGAGCTTTTTGATAGGATTGCCAAGCGAGGCCATTATACAGAAAGAAAGGCAGCTCAGCTTGCAAGGACTATAATTGGTGTTGTAGAAGCCTGCCACTCTTTAGGGGTCATGCACCGGGACCTTAAGCCTGAGAATTTTCTTTTTGTCAATGAGCAAGAGGAATCACTTCTTAAGACAATAGACTTTGGGTTGTCCGTATTCTTCAAGCCAGGGGAGATTTTCACTGATGTGGTTGGAAGCCCATATTATGTGGCACCTGAAGTTCTGAGAAAGTGTTATGGTCCAGAAGCAGATGTTTGGAGTGTTGGGGTGATCATTTATATTCTCTTAAGTGGGGTGCCTCCATTTTGGGCAGAAAGTGAGCAAGAGATATTTCAAGAAGTACTGCATGGTGATCTTAACTTCTCATCAGATCCATGGCCTCATATCTCTGAAAGTGCTAAGGACTTAATTAGGAGAATACTTGTCAGAGATCCCAAGAAACGCCTAACTGCCCATGAAGTCCTGTGTCACCCTTGGATTCAGGTTGATGGAGTAGCTCCTGACAAAACCCTTGATTCTGCAGTCATAAGTCGCTTGAAGCAGTTTTCAGCCATGAACAAGCTTAAGAAAATGGCTCTTAGAGTGATTGCTGAGAATCTCTCTGAAGAAGAAATTGCTGGATTGAAAGAAATGTTCAAGATTATTGATACAGACAATAGTGGTCAGATTACTTTTGAAGAACTCAAGGCTGGACTAAAAAGATTTGGCGCTAATCTTAATGAAGCTGAAATTTATGATCTAATGCAGGCTGCAGATGTTGATAATAGTGGAACAATCGATTATGGGGAGTTCATAGCTGCAACATTCCATCTAAACAAAATTGAGAGAGAAGATCACCTATTTGCTGCTTTTTCCTACTTTGACAAAGATGGAAGTGGCTATATCACTCCAGATGAGCTCCAAAAAGCCTGTGAGGAGTTTGGGATGGAGGATGTCCATTTGGAAGAAATGATCCAAGAAGTTGACCAGGACAATGACGGCCGCATAGATTATAATGAGTTTGTGGCAATGATGCAGCAAGGAAACAATAATGATTTTGGTAAGAAGGGTCTGCAGAATGGTATTAGCTTTGGGTTTAGGCAGCCGCTACCAGTCTATTGA 1743 0.432 MGNNCVGSMVPEHGLFESISNSIWWTRASECMTSHSTGEGVSETQSKEQKSPPPVQNKPPEEVELINPPEVMKITKEETKPTPTPKRPLLMKRLPSAGLEVDLVLKDKTDHLKEHYNLGRKLGHGQFGTTFLCVEKETGKEYACKSIAKRKLLTRDDIEDVRREIQIMHHLAGHSNIISIKGAYEDAVAVHLVMELCTGGELFDRIAKRGHYTERKAAQLARTIIGVVEACHSLGVMHRDLKPENFLFVNEQEESLLKTIDFGLSVFFKPGEIFTDVVGSPYYVAPEVLRKCYGPEADVWSVGVIIYILLSGVPPFWAESEQEIFQEVLHGDLNFSSDPWPHISESAKDLIRRILVRDPKKRLTAHEVLCHPWIQVDGVAPDKTLDSAVISRLKQFSAMNKLKKMALRVIAENLSEEEIAGLKEMFKIIDTDNSGQITFEELKAGLKRFGANLNEAEIYDLMQAADVDNSGTIDYGEFIAATFHLNKIEREDHLFAAFSYFDKDGSGYITPDELQKACEEFGMEDVHLEEMIQEVDQDNDGRIDYNEFVAMMQQGNNNDFGKKGLQNGISFGFRQPLPVY* 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0254 580 Gene3D Transferase(Phosphotransferase) domain 1 202 398 - -
Vvi8g0254 580 Pfam EF-hand domain pair 434 484 IPR002048 GO:0005509
Vvi8g0254 580 MobiDBLite consensus disorder prediction 34 90 - -
Vvi8g0254 580 ProSiteProfiles EF-hand calcium-binding domain profile. 417 452 IPR002048 GO:0005509
Vvi8g0254 580 PANTHER SERINE/THREONINE-PROTEIN KINASE 108 548 - -
Vvi8g0254 580 Gene3D Phosphorylase Kinase; domain 1 118 201 - -
Vvi8g0254 580 SUPERFAMILY EF-hand 413 553 IPR011992 -
Vvi8g0254 580 SMART serkin_6 116 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g0254 580 Pfam Protein kinase domain 116 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g0254 580 ProSiteProfiles EF-hand calcium-binding domain profile. 453 488 IPR002048 GO:0005509
Vvi8g0254 580 ProSitePatterns EF-hand calcium-binding domain. 502 514 IPR018247 -
Vvi8g0254 580 ProSiteProfiles EF-hand calcium-binding domain profile. 489 524 IPR002048 GO:0005509
Vvi8g0254 580 FunFam Calcium-dependent protein kinase SK5 284 379 - -
Vvi8g0254 580 CDD EFh 422 481 IPR002048 GO:0005509
Vvi8g0254 580 ProSiteProfiles EF-hand calcium-binding domain profile. 527 558 IPR002048 GO:0005509
Vvi8g0254 580 Pfam EF-hand domain pair 492 553 IPR002048 GO:0005509
Vvi8g0254 580 FunFam Calcium-dependent protein kinase 1 118 201 - -
Vvi8g0254 580 ProSitePatterns Serine/Threonine protein kinases active-site signature. 236 248 IPR008271 GO:0004672|GO:0006468
Vvi8g0254 580 SMART efh_1 421 449 IPR002048 GO:0005509
Vvi8g0254 580 SMART efh_1 457 485 IPR002048 GO:0005509
Vvi8g0254 580 SMART efh_1 527 555 IPR002048 GO:0005509
Vvi8g0254 580 SMART efh_1 493 521 IPR002048 GO:0005509
Vvi8g0254 580 ProSitePatterns EF-hand calcium-binding domain. 466 478 IPR018247 -
Vvi8g0254 580 ProSitePatterns Protein kinases ATP-binding region signature. 122 149 IPR017441 GO:0005524
Vvi8g0254 580 FunFam Calcium-dependent protein kinase 1 382 556 - -
Vvi8g0254 580 SUPERFAMILY Protein kinase-like (PK-like) 114 375 IPR011009 -
Vvi8g0254 580 CDD STKc_CAMK 115 373 - -
Vvi8g0254 580 FunFam CDPK-related kinase 3 108 276 - -
Vvi8g0254 580 ProSitePatterns EF-hand calcium-binding domain. 536 548 IPR018247 -
Vvi8g0254 580 Gene3D - 399 558 - -
Vvi8g0254 580 MobiDBLite consensus disorder prediction 34 52 - -
Vvi8g0254 580 CDD EFh 493 553 IPR002048 GO:0005509
Vvi8g0254 580 ProSitePatterns EF-hand calcium-binding domain. 430 442 IPR018247 -
Vvi8g0254 580 ProSiteProfiles Protein kinase domain profile. 116 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0254 Vvi-Chr8 5882896 5886558 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0254 1 574 EF-hand Containing Proteins AT5G04870 70.540 0.0 867
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vvi8g0254 Pkinase 2.8e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0254 K13412 - vvi:100250354 1164.06