Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0252 ATGACAATGCAAACCACCTATTTCAAGGAACATGCGGGAAGTGCCCATAATCCCACTGGGCAATTATCGTCCGCTGCAGCAGTGCCTTGGTGGAGTGGGCTTGGATCTCAATCAGTTTATGATGAATCTTTTGCTCAATTGAAGTCTTTATCAATGGAACATCCCGGTAAAGGAGACCAACTCACTGCCATTAAACAAGTGGAGCTGGGTGCAGAAGATGGAACGGATAAGGGGAATTCAACTCAGTTCACTATATTTTCCGGTGAATGCAAAAATTCAGAGGATGCACAAAAGCCTCAGCCACTCCAGGCAACCATCTCTATGCAATCAACTATCCCAGAATATCAAACTCGTTTTGAGCTTGGATTTGGTCAGCCCATGGTCTGTGTGAAGTATCCTTATGCGGATCAATGTTATGGAGTCTTCTCAGCTTATGGACATCAAGGACGTATCATGCTGCCTCTAAGCTTGACAACAGATGATGGACCAATATATGTAAATGCTAAGCAGTATCATGGAATCATTCGGCGACGGCAGTCCCGTGCAAAGGCAGAACTGGAGAATAAACTGACAAGAGCTCGCAAGCCATATATGCATGAATCACGCCATCTCCATGCAATGCGTCGACCAAGGGGGTGTGGTGGCCGTTTTTTGAAAAAGAATCTGAATGGTGGGAAGTGTGGAACTGACATGAAAAAGGTTGATAACAGGCAACTTTCTCAGCCTACTGGATCTCAGATTTCTGAAGTTTTGCAATCTGATGGTGGAAATATGAACTCACCAAAGGAAGCAAATGGCAACCTGTCAAAACTTTTGGGATCAGAGGTGACTAGTATGTATTCAAGGCGATATCTCCATCAGTTCCCTGTCAATAATGTTCAAGCATCTGTTGACACTCTTGTTGACATGATGGACAGAGGACATGGTATAGTTATGCCCAGTAAGTGGGTTGCAGCAGCAGATAACCGCTGCAACCCCAAAGCTTAA 987 0.4468 MTMQTTYFKEHAGSAHNPTGQLSSAAAVPWWSGLGSQSVYDESFAQLKSLSMEHPGKGDQLTAIKQVELGAEDGTDKGNSTQFTIFSGECKNSEDAQKPQPLQATISMQSTIPEYQTRFELGFGQPMVCVKYPYADQCYGVFSAYGHQGRIMLPLSLTTDDGPIYVNAKQYHGIIRRRQSRAKAELENKLTRARKPYMHESRHLHAMRRPRGCGGRFLKKNLNGGKCGTDMKKVDNRQLSQPTGSQISEVLQSDGGNMNSPKEANGNLSKLLGSEVTSMYSRRYLHQFPVNNVQASVDTLVDMMDRGHGIVMPSKWVAAADNRCNPKA* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0252 328 MobiDBLite consensus disorder prediction 1 21 - -
Vvi8g0252 328 Gene3D - 160 221 - -
Vvi8g0252 328 SMART cbf3 159 220 IPR001289 GO:0003700|GO:0006355
Vvi8g0252 328 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 163 217 IPR001289 GO:0003700|GO:0006355
Vvi8g0252 328 PRINTS CCAAT-binding transcription factor subunit B signature 194 217 IPR001289 GO:0003700|GO:0006355
Vvi8g0252 328 PRINTS CCAAT-binding transcription factor subunit B signature 163 185 IPR001289 GO:0003700|GO:0006355
Vvi8g0252 328 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 31 281 IPR001289 GO:0003700|GO:0006355
Vvi8g0252 328 ProSitePatterns NF-YA/HAP2 subunit signature. 165 185 IPR018362 GO:0003677|GO:0016602
Vvi8g0252 328 ProSiteProfiles NF-YA/HAP2 family profile. 160 220 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0252 Vvi-Chr8 5783490 5791348 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0252 22 324 CCAAT-HAP2 Transcription Factor Family AT3G05690 45.652 6.18e-63 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Vvi8g0252 CBFB_NFYA 4.4e-27 No_clan