Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0251 ATGATGGGCCATAGAAAAGCAACCCCCAAGCCTAAATCCAACCTACAACCTTATCCATCATTTTTCCCAGACCATTCATCATTCATTCAAGCATTTCTTTTGCAGTTTTTCCTTCATCCCACATCCATGTCAGCCTCTTCCCTTAACATGGCCGCTGCTGCCGCTGCTGCGGCGGCCTCTTCTTCACCTTCACTCCGTATTCCCTACAGAATCTCCAAACTCTCTCTCATCCCGATCTCCACCCACTTCCCCTCGATACCCAAACCTCTCAAACTCACTACCCAATCCGCCCACTTCCCACACCACCTCTGCAGAACCACCCAACACCAAGATCCACAACTACAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAAGAGGAACAACAAGAAGAGGAGGAGGACCCAAAGGTGTCAGACTCAGCTGAAGCCAGCAGGCTATATGTAGGGAACTTGCCATATTCTATGACTTCTTCCCAATTGGGTGATGTCTTTAATGAAGCTGGTAGTGTTATCTCTGTGGAGATTGTTTATGATAGAGTCACAGATAGGAGCAGGGGGTTTGCTTTTGTTACAATGGGAAGCGTCCAAGAAGCCAAAGAGGCTATTAGAATGTTTGATGGATCTCAAGTTGGAGGCCGAACAGTGAAGGTTAACTTCCCTGAAGTGCCAAGAGGGGGAGAAAGGGCAGTAATGGGGCCAAAGATTAGAAGCAGCTACAGGGGCTTTGTTGACAGCCCTTACAAGATCTATGCAGGGAACCTCAGCTGGCGTCTCACATCGGAGGGGCTTAGAGATGCTTTTGCTGATCATCCAGGCCTATTGGGTGCCAAGGTCATCTATGAAAGGGAGTCTGGAAGATCTCGGGGTTTTGGGTTTCTCTCGTTTGCATCTGCTGAGAATGCAGAGTCTGCCCTCAATGCAATGAATGAAGTGGAGGTGGAAGGGCGGCCTTTACGATTAAACTTAGCTGCAGTAAGAGCCCCTCCTGCCCCTTCTCCAGGACCAGGACTGGAAAGAAATGTTGACAACAGCGAATTGATTTCTAGCATCAGCACATAA 1062 0.4831 MMGHRKATPKPKSNLQPYPSFFPDHSSFIQAFLLQFFLHPTSMSASSLNMAAAAAAAAASSSPSLRIPYRISKLSLIPISTHFPSIPKPLKLTTQSAHFPHHLCRTTQHQDPQLQEEEEEEEEEEEEEQQEEEEDPKVSDSAEASRLYVGNLPYSMTSSQLGDVFNEAGSVISVEIVYDRVTDRSRGFAFVTMGSVQEAKEAIRMFDGSQVGGRTVKVNFPEVPRGGERAVMGPKIRSSYRGFVDSPYKIYAGNLSWRLTSEGLRDAFADHPGLLGAKVIYERESGRSRGFGFLSFASAENAESALNAMNEVEVEGRPLRLNLAAVRAPPAPSPGPGLERNVDNSELISSIST* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0251 353 CDD RRM1_PSRP2_like 146 225 - -
Vvi8g0251 353 Gene3D - 234 333 IPR012677 -
Vvi8g0251 353 Coils Coil 111 135 - -
Vvi8g0251 353 CDD RRM2_NsCP33_like 249 324 - -
Vvi8g0251 353 PANTHER OS02G0815200 PROTEIN 55 329 - -
Vvi8g0251 353 SUPERFAMILY RNA-binding domain, RBD 245 338 IPR035979 GO:0003676
Vvi8g0251 353 FunFam 33 kDa ribonucleoprotein, chloroplastic 230 334 - -
Vvi8g0251 353 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 250 320 IPR000504 GO:0003723
Vvi8g0251 353 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 147 217 IPR000504 GO:0003723
Vvi8g0251 353 MobiDBLite consensus disorder prediction 114 138 - -
Vvi8g0251 353 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 145 223 IPR000504 GO:0003723
Vvi8g0251 353 MobiDBLite consensus disorder prediction 108 142 - -
Vvi8g0251 353 Gene3D - 104 230 IPR012677 -
Vvi8g0251 353 SUPERFAMILY RNA-binding domain, RBD 143 222 IPR035979 GO:0003676
Vvi8g0251 353 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 248 326 IPR000504 GO:0003723
Vvi8g0251 353 MobiDBLite consensus disorder prediction 328 353 - -
Vvi8g0251 353 SMART rrm1_1 146 219 IPR000504 GO:0003723
Vvi8g0251 353 SMART rrm1_1 249 322 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0251 Vvi-Chr8 5773528 5775835 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0251 147 352 Eukaryotic Initiation Factors Gene Family AT3G16380 27.184 2.25e-13 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0251 - - vvi:100255531 541.962