Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0248 ATGAACGATCTCTTCTCCGGTTCCTTCTCCCGCTTCCGCAGCGAAGAGCCGCCTCCGTCTGTCGAGATGACCTCCTCAACCGCGGGTGTCAATCTCGACAAGTTCTTCGAAGATGTCGAATCCATCAAGGAGGAACTCCGAGAGATGGAGTCCCTGCAGCAGAAGCTCCACGACGCTCACGAGCAGAGCAAGACTCTCCACAACGCCAACTCCGTCAAGGAGCTCCGATCGCGGATGGACTCTCACGTCTCCCTCGCTCTCAAGAAGGCCAAGCTCATCAAGCTCCGCCTCGAAGCCCTCGATCGCTCCAACGCCGCCAACCGCAGTCTCCCCGGATGCGGCCCCGGTTCTTCCTCCGACCGCACCCGCACATCCGTCGTCAACGGTCTTCGCAAGAAGCTCAGGGACTCCATGGACGCCTTCACCTCCATCCGCAACCAAATCTCCTCCGAGTATCGCGAAACCGTCCAGCGCCGCTACTTCACCGTCACCGGCGAAAATCCCGACGAAAAAACCGTAGATCTGCTCATCTCCACCGGCGAGAGCGAAACCTTCCTTCAGAAGGCGATCCAAGAGCAAGGCAGAGGTAGAGTTCTGGACACCATCTCCGAGATTCGCGAGCGCCACGAGTCCGTCAAAGAACTGGAGAGGAACCTCAAGGAACTCCACCAGGTGTTCCTCGACATGGCTGTCCTGGTCCAAGCTCAGGGAGAGCAACTCGACGACATCGAGAGCCAGGTGGCAAGAGCCAATTCGTTCGTTACAGGCGGAACACAACAACTCCAAACGGCGCGTAAGCACCAGATCAGCAGCCGCAAGTGGACCTGTTACGGTATTATCATCTTGATTGTGATTATCTTGTTGATTGTGCTCTTCACCGTGCGGCCTTGGGAGAACAACGGCAGTAGCAGTAGCGGGAGCACCAGTAGCACATCTCCACCTCCACCTCCACCACCTCCACCTACTCAGGCGTAG 975 0.5754 MNDLFSGSFSRFRSEEPPPSVEMTSSTAGVNLDKFFEDVESIKEELREMESLQQKLHDAHEQSKTLHNANSVKELRSRMDSHVSLALKKAKLIKLRLEALDRSNAANRSLPGCGPGSSSDRTRTSVVNGLRKKLRDSMDAFTSIRNQISSEYRETVQRRYFTVTGENPDEKTVDLLISTGESETFLQKAIQEQGRGRVLDTISEIRERHESVKELERNLKELHQVFLDMAVLVQAQGEQLDDIESQVARANSFVTGGTQQLQTARKHQISSRKWTCYGIIILIVIILLIVLFTVRPWENNGSSSSGSTSSTSPPPPPPPPPTQA* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0248 324 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 202 264 IPR000727 -
Vvi8g0248 324 Gene3D - 198 294 - -
Vvi8g0248 324 Pfam SNARE domain 238 290 IPR000727 -
Vvi8g0248 324 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 29 159 - -
Vvi8g0248 324 Pfam Syntaxin 34 237 IPR006011 GO:0016020
Vvi8g0248 324 MobiDBLite consensus disorder prediction 300 324 - -
Vvi8g0248 324 CDD SynN 32 189 IPR006011 GO:0016020
Vvi8g0248 324 SMART SynN_4 27 153 IPR006011 GO:0016020
Vvi8g0248 324 Coils Coil 32 69 - -
Vvi8g0248 324 SUPERFAMILY t-snare proteins 30 257 IPR010989 GO:0016020|GO:0016192
Vvi8g0248 324 PANTHER SYNTAXIN 40 286 IPR045242 -
Vvi8g0248 324 CDD SNARE_syntaxin1-like 201 263 - -
Vvi8g0248 324 MobiDBLite consensus disorder prediction 1 26 - -
Vvi8g0248 324 SMART tSNARE_6 197 264 IPR000727 -
Vvi8g0248 324 MobiDBLite consensus disorder prediction 310 324 - -
Vvi8g0248 324 FunFam Syntaxin 132 195 295 - -
Vvi8g0248 324 ProSitePatterns Syntaxin / epimorphin family signature. 208 247 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vvi8g0248 324 Coils Coil 205 225 - -
Vvi8g0248 324 Gene3D - 30 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0248 Vvi-Chr8 5679576 5680550 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0248 26 324 SNARE and Associated Proteins AT3G11820 70.066 2.35e-146 413
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0248 K08486 - vvi:100265818 553.518