Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0243 ATGTCTCTGGATATCGCTTCTGAACGTGTTTGTTATGTGCACTGCAACTTCTGCAACACCATTTTAGCGGTGAGTGTCCCGTGCACCAGTGTGTTCAATGCTGTGACCATTAGGTGTGGCCACTGTGCTAATCTTTTGTCAGTGAACATGGGAGCTTTGCTACAGACTGTCCCTCTTCATGATCTTCAGAAGGAGAACCTACTTTTCCAAGCCTCTAGCAAGGAGTGCGGATCTTCTTCCAAATTCCACAAGGTTGCTGCAATGGATTCTTCAGATAATGAGCAACCTAGAATGCTTCCAAAAGCACAAGAGAAAAAGCAAAGGGTCCCATCAGCATACAACAGGTTTATTAAGGAGGAGATTCAAAGGATAAAAGCTAATAATCCTGACATAAGCCATAAGGAAGCCTTTAGTACTGCAGCAAAAAATTGGGCGCATTTCCCTCATATCCACTTTGGGCTAACGCTGAACAACAGCAAGAGCGACAAAGCTAACTTTGATGAAGCATTTTCTGGGGAAGGGCCAAGAAAGACCCAAGGATTCTACTAA 549 0.4408 MSLDIASERVCYVHCNFCNTILAVSVPCTSVFNAVTIRCGHCANLLSVNMGALLQTVPLHDLQKENLLFQASSKECGSSSKFHKVAAMDSSDNEQPRMLPKAQEKKQRVPSAYNRFIKEEIQRIKANNPDISHKEAFSTAAKNWAHFPHIHFGLTLNNSKSDKANFDEAFSGEGPRKTQGFY* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0243 182 CDD HMG-box_SF 108 144 - -
Vvi8g0243 182 Gene3D High mobility group box domain 99 172 IPR036910 -
Vvi8g0243 182 PANTHER PROTEIN YABBY 6-RELATED 6 164 IPR006780 GO:0007275
Vvi8g0243 182 SUPERFAMILY HMG-box 95 147 IPR036910 -
Vvi8g0243 182 Pfam YABBY protein 6 154 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0243 Vvi-Chr8 5502674 5509282 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0243 1 182 C2C2-YABBY Transcription Factor Family AT1G08465 57.672 5.90e-70 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Vvi8g0243 YABBY 5.2e-69 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0243 K25796 - vvi:100267536 370.548