Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0239 ATGGACAGATGTTATGATCTGTTGGAAGTCAAAGCAAAGGAAATTGCAATATTGGATGACAAAGATGGGCAGATTCATCTAAAGGGCTTACCTCGTGTCCCAATAAGTTCCATGTCTGAATTTTATGAGGTCTTCTCTCGTGGAATTCAGCGCAGAAAAGTTGCACACACAGGGCTTAATGATGTCTCTAGCAGAAGCCATGGAGTCCTTGTGATATCTGTTTCCACTCCTTGTGATGATGGCTCCGGTGCTGTTGTTACTTGGAAGTTGAACCTCATCGATTTAGCAGGTAATGAAGATAACAGAAGAACCTACAATGAAGGGATACGTCTCCAAGAGAGTGCTAAGATCAACCAGTCCTTATTTGTCTTATCAAATGTGATTTATGCCCTTAACAATAACAAGCCCCAAGTACCATACAGAGAAAACAAACTGACCCGGATACTGCAAGATTCCCTTGGAGGAACCAGCCGTGCATTGATGGTTGCTTGTCTGAATCCAGGAGAGTACCAAGAATCTGTTCATACGGTCAGCTTGGCTGCACGGTCGCGCCACATATCTAACTCTGTTCCATCAGCTCAAAAACAAGATACTCCAAATGTTAAAGTTGACATGGAGGCGAAATTGCGTGCCTGGCTTGAATCAAAAGGAAAGACAAAGAGTGCACAAAGAATGAGGGCATTTGGTTCACCTCTTATGAGCAAAGCTCCTAGTTCTTTGAGCTCTTTGAAGAAGCCCTGTCCGTGTTACAGCTCCACAAAAGCAAAGGCTATTACAAACCAAGGTGCTTCTAATGCTAAAGAAAGGTTTCTTTCTGTGCAGCACATAAATTTATTCTACAATGGAGATTCAGTTGATTCTGGCACAAAGCGTTTCAACTTTGCTGCTGAGAACAATACCAACAATACAGAAGAAGAGTTCAAGGCTTTGGTGGGGGGCCCGACATCTATGATGTTTTCTTCAACACTTTTTGTTTGA 978 0.4264 MDRCYDLLEVKAKEIAILDDKDGQIHLKGLPRVPISSMSEFYEVFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTPCDDGSGAVVTWKLNLIDLAGNEDNRRTYNEGIRLQESAKINQSLFVLSNVIYALNNNKPQVPYRENKLTRILQDSLGGTSRALMVACLNPGEYQESVHTVSLAARSRHISNSVPSAQKQDTPNVKVDMEAKLRAWLESKGKTKSAQRMRAFGSPLMSKAPSSLSSLKKPCPCYSSTKAKAITNQGASNAKERFLSVQHINLFYNGDSVDSGTKRFNFAAENNTNNTEEEFKALVGGPTSMMFSSTLFV* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0239 325 PRINTS Kinesin heavy chain signature 89 107 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi8g0239 325 PRINTS Kinesin heavy chain signature 138 159 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi8g0239 325 PRINTS Kinesin heavy chain signature 57 74 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi8g0239 325 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 216 IPR027417 -
Vvi8g0239 325 Gene3D Kinesin motor domain 1 228 IPR036961 -
Vvi8g0239 325 ProSiteProfiles Kinesin motor domain profile. 1 186 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi8g0239 325 SMART kinesin_4 1 194 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi8g0239 325 Pfam Kinesin motor domain 2 186 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi8g0239 325 PANTHER CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED 1 206 IPR027640 GO:0003777|GO:0007018
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0239 Vvi-Chr8 5325803 5326780 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0239 2 218 Calmodulin-binding Proteins AT5G65930 33.333 6.42e-29 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0239 K10403 - vvi:104877678 549.666