Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0238 ATGATACAAGTATTTGGATGCCTTGTTCACTGCTGCAGGAGGATCTCGGGTCTGGCTGATACCATCTGTGGCGCTAAGGAAGCTCAGAGGAGCAACAGTCGCGAGTTTCGTCTCCGGCGACGCCCACTGAAGAAGTCCAATGTTTTTTTTTTCTCTTCAGAATCACCCCGTCTGCACCACCGCTGCCGTCACCACCGCGAGCATCAGTCATCCATCCACTCATCGGACGATCAGAAATCTCATGGCCTGGGACAGAGCCTCTCACCTCTGCTTGAGCGCACTCTAGATCACCTAGCTCCTCATGCTCGGCTGGAGAACAGAAATTGGGTGGAATCATCCAAAGTTGCTGCTCTTTTGCTTGAACTAGAAAATCTCTGCTCTGTAGGTTCCAAAAGTATTTTATTTAGCCAGTGGACTGCCTTTCTCGACCTCTTGCAGATTCCCCTTTCTCGGAGTAACATATCATTTGTTCGTCTGGATGGAACTCTGAATCAGCAGCAACGGGAAAAAGTGATTAAACAATTCTCAGAGGAAAGCCACATCCTGGTCTTGCTAATGTCATTGAAGGCTGGTGGAGTTGGAATAAACCTAATGGCTGCGTCCCATGCCTTTGTTTTGGATCCATGGTGGAATCCAGCTGTAGAGGAACAAGCTGTTATGCGCATTCATCGTATTGGACAAACAAAAAGGGTAATGATCAAGCGGTTCATTGCGAAGGGAACAATACAGAGGAGTGCACTGATTGCTTCAAAGATGCAAAGTAGAGCAACATGA 774 0.4767 MIQVFGCLVHCCRRISGLADTICGAKEAQRSNSREFRLRRRPLKKSNVFFFSSESPRLHHRCRHHREHQSSIHSSDDQKSHGLGQSLSPLLERTLDHLAPHARLENRNWVESSKVAALLLELENLCSVGSKSILFSQWTAFLDLLQIPLSRSNISFVRLDGTLNQQQREKVIKQFSEESHILVLLMSLKAGGVGINLMAASHAFVLDPWWNPAVEEQAVMRIHRIGQTKRVMIKRFIAKGTIQRSALIASKMQSRAT* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0238 257 Gene3D - 27 256 IPR027417 -
Vvi8g0238 257 CDD SF2_C_SNF 110 237 - -
Vvi8g0238 257 Pfam Helicase conserved C-terminal domain 119 226 IPR001650 -
Vvi8g0238 257 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 114 257 IPR001650 -
Vvi8g0238 257 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 41 244 - -
Vvi8g0238 257 SMART helicmild6 143 226 IPR001650 -
Vvi8g0238 257 MobiDBLite consensus disorder prediction 62 83 - -
Vvi8g0238 257 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 89 244 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0238 Vvi-Chr8 5306317 5307191 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0238 107 243 RAD5 or RAD16-like Gene Family AT5G22750 82.482 4.77e-72 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0238 K15505 - vvi:100246473 258.07