Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0229 ATGGCGAGAAAGAAGGTTAGACTTGCATGGATAGCGAGCGATAGTGCTAGAAGAGCTTGCTTTCGGAAAAGGAGGGCTGGCTTATTGAAGAAAGTGATGGAGTTGTCTACTCTGTGTGGGGTGGAGGCTGCTATCGTCGTCTTCTGTCCAGACGACGAACCAGCATTTTGGCCTTCTAAGCCAGCGGTGGAACAGCTATTCAGGAGGTATGAGGAGATTCCTGTTATGGAGCGAAGCAAGAAGATGTTGAGTCAAGAGAATTTCCTGAGGGAGAGGATAGCCAAGATTAGCGAACAGACAAGCAAGTGCCTGAAGAGGGTTGTAGAGATGGAGATGAATGACCTCGTATATCAGATTGTTAACGGGAATCGAATGTATGAACTTCCCATTAGTGACCTGACTAATGTGATGCGGTTCTTGGAAGAGAAGAACAGTGAAATCAGCAAAAGGGCCCAACATCTTCATGAGTTTCCTCCCCTTTCCGGGAATGGTACTCCATCATCATCGTCTCTTCCTCCTGCCCTTATCTCTGCTCTGGAAAGGGCAGCCCCATCTGGAGGCCTTGATACAGAGGGAAGGGGTGCCATCGACAATCCAAGGAGGGATAAGTGGATCACTGATAAGAGTTTGGTTAACAATATTGCTGCTAACGGTGGTTGGAACGAGATTGGGATGCAGCAATACAAGGATATGCTAGGGTTGCTCCATGGAATTTCCAATATTCCAATGCAGCCAAGCAGTGCAAGTAATAATATAGAGTTTTCCCAGGGTAATACTCATATTCCCATGGCTGGAGAAGAGATGTGGCTACCATATGGAAACATGGGTGGTTCCGGTACTGGTGGGATTCCAATGGAGTCACTTCACGGAAGTACTGATTTGACAATCAACCTGATGGGGCCCCGGTATGGATTTAACATTCGCACATCATCTGGTGGAAATCAGATGGGGTTACCCCATAGGAATGCTGATCTAGTGGCTGGGAGTGAGATAGCGTTTCCATATGGAACAGGAGGTGGAAACATCGATTTTCCCGTGGCTGCCAATCAGATGGGGTTGCCGGACAGATCCAATGGTAGTTTGATCACTGGAGTAAATCACCACGGAAACACTGATTTTCTCATGGCTGGGAATCAGATGGGGCTGCCATATGGAATCAATGATAGTTTCGCTGGTGGAAATGAAATGGGGGTGCCTCATGGGAATAGTACTGGTATGACAATGGTGGGGAGTGAGGCGGGACTTCCAACTGGAAACATAGGCAGCTCTACCCGCGGACATCAAATGGGGGCTGTTGGCCTTATGCTAGGGAATGAGATGGGGCCGCCATATGGAAATTTCGGTGTTGGGGTACCCTATGGAAACAATTCTACCGGTGCCATTGTCGGGAATGAGATGGGGCAGCTGCCATATGGGGATGTTGTAGGAGGTGGAATGGAGCTACTTCATGCAAATGTTGGTCCTAGCCGTGCTAGTTACAATGGAGTGAACATCATGGGACTGCCTCGAGGAAATATTGCTAATAGCAGCGGTGGAAATGATCGGGGGCAGCTGTATGATGTCAATTACCAGGCATGGTTTGACAGTTTGGGTGTTTAA 1599 0.4822 MARKKVRLAWIASDSARRACFRKRRAGLLKKVMELSTLCGVEAAIVVFCPDDEPAFWPSKPAVEQLFRRYEEIPVMERSKKMLSQENFLRERIAKISEQTSKCLKRVVEMEMNDLVYQIVNGNRMYELPISDLTNVMRFLEEKNSEISKRAQHLHEFPPLSGNGTPSSSSLPPALISALERAAPSGGLDTEGRGAIDNPRRDKWITDKSLVNNIAANGGWNEIGMQQYKDMLGLLHGISNIPMQPSSASNNIEFSQGNTHIPMAGEEMWLPYGNMGGSGTGGIPMESLHGSTDLTINLMGPRYGFNIRTSSGGNQMGLPHRNADLVAGSEIAFPYGTGGGNIDFPVAANQMGLPDRSNGSLITGVNHHGNTDFLMAGNQMGLPYGINDSFAGGNEMGVPHGNSTGMTMVGSEAGLPTGNIGSSTRGHQMGAVGLMLGNEMGPPYGNFGVGVPYGNNSTGAIVGNEMGQLPYGDVVGGGMELLHANVGPSRASYNGVNIMGLPRGNIANSSGGNDRGQLYDVNYQAWFDSLGV* 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0229 532 PANTHER MADS BOX PROTEIN 3 118 - -
Vvi8g0229 532 CDD MADS_SRF_like 2 82 IPR033897 GO:0000981|GO:0000987|GO:0045944
Vvi8g0229 532 Gene3D - 14 95 IPR036879 GO:0003677|GO:0046983
Vvi8g0229 532 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vvi8g0229 532 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vvi8g0229 532 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vvi8g0229 532 ProSiteProfiles MADS-box domain profile. 1 48 IPR002100 GO:0003677|GO:0046983
Vvi8g0229 532 Coils Coil 130 150 - -
Vvi8g0229 532 SUPERFAMILY SRF-like 3 94 IPR036879 GO:0003677|GO:0046983
Vvi8g0229 532 SMART madsneu2 1 59 IPR002100 GO:0003677|GO:0046983
Vvi8g0229 532 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 54 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0229 Vvi-Chr8 4962832 4964430 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0229 1 154 Type I MADS-box Gene Family AT5G48670 41.026 1.84e-29 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vvi8g0229 SRF-TF 2.2e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0229 - - vvi:104879997 1083.17