Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0222 ATGGAAGAGGTAAAAAATTCTGAGAATCATATGACATCAGCTGCAGCTTTTGTTGAAGGAGGAGTGCAAGAAGCTTGTGATGATGCTTGCAGCATATGCCTTGAAGCATTCTGTGACAGTGATCCTTCTACGTTGACTAGTTGCAAGCATGAGTTTCACCTTCAGTGCATTCTTGAATGGTGCCAGAGAAGCTCTCAATGTCCAATGTGCTGGCAATCAATTAGCCTGAAGGATCCAACCAGTCAGGAATTGCTTGAGGCTGTAGAACGGGAGAGGAATATTAGGCTTACTCCACCAAGAAGTGCAATATTTCATCATCCCACCCTTGGGGATTTTGAATTACAGCATTTACCAGTGGGCACAAATGATCCTGAACTCGAAGAGCGAATAATTCAGCACTTGGCTGCTGCTGCTGCTATGGGAAGGGCTCACCACATTGCTCGAAGGGAAGGCCAGAGGAGTCGTTCATCTGCTCATGGGCGTTCACACTTCTTGGTATTCTCAACTCATCCTAATGCAACTGCTTCAGGTCCTGTTCCTGCCTCTCTGGTTCAGGTAGGAGAAAATGAACCAGCTGCAATAACTGTAGCTAGTCCATCTATCCCACTTCCAGCTGGTGGGGATGAGCCATCGCAGGAAATCCCACAATTTCCATCTGTTCAAACTGATCACATGTCTGCATCAGCATCCAGATCTGCTGTCACACCACGACGAATTTCCTTTAATAATCGCAGCTCTGCAAGTCAATCTTCACCTCCAGATCAAGATAGAGCAGGACCTTCTGAGTTACAGTCCTTTTCAGAATCCCTGAAATCTCGACTTAATGCAGTATCAATGAGATACAAAGAGTCGATTTCAAAGAGTACAAGAGGGTGGAAGGAGAGGCTGTTCTCTCGTAACAATTCCATGGCTGACCTTGGTTCTGAAGTTCGGAGAGAGGTGAATGCTGGAATTGCTAGTGTATCTCGCATGATGGAGCGTCTTGACACCAGGGAAAATAATGGGGCCGGCCAGGCTTCTGTATCAAGTCATCTGGCTGATTCTGTTACGGAGCAGAGTAACCAGAATGAGAGAGAGACTCGTGCTGAAAACCCTCTGAACGACAGCAATACACCAGCTGCTTGTGCTGCAAGCTCGGGTTCAAATTAA 1149 0.4656 MEEVKNSENHMTSAAAFVEGGVQEACDDACSICLEAFCDSDPSTLTSCKHEFHLQCILEWCQRSSQCPMCWQSISLKDPTSQELLEAVERERNIRLTPPRSAIFHHPTLGDFELQHLPVGTNDPELEERIIQHLAAAAAMGRAHHIARREGQRSRSSAHGRSHFLVFSTHPNATASGPVPASLVQVGENEPAAITVASPSIPLPAGGDEPSQEIPQFPSVQTDHMSASASRSAVTPRRISFNNRSSASQSSPPDQDRAGPSELQSFSESLKSRLNAVSMRYKESISKSTRGWKERLFSRNNSMADLGSEVRREVNAGIASVSRMMERLDTRENNGAGQASVSSHLADSVTEQSNQNERETRAENPLNDSNTPAACAASSGSN* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0222 382 MobiDBLite consensus disorder prediction 214 267 - -
Vvi8g0222 382 MobiDBLite consensus disorder prediction 333 353 - -
Vvi8g0222 382 FunFam E3 ubiquitin-protein ligase RHF2A 1 104 - -
Vvi8g0222 382 MobiDBLite consensus disorder prediction 332 382 - -
Vvi8g0222 382 MobiDBLite consensus disorder prediction 198 267 - -
Vvi8g0222 382 SUPERFAMILY RING/U-box 23 78 - -
Vvi8g0222 382 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 97 IPR013083 -
Vvi8g0222 382 ProSiteProfiles Zinc finger RING-type profile. 30 70 IPR001841 -
Vvi8g0222 382 MobiDBLite consensus disorder prediction 365 382 - -
Vvi8g0222 382 Pfam Ring finger domain 29 70 IPR001841 -
Vvi8g0222 382 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 13 79 - -
Vvi8g0222 382 SMART ring_2 30 70 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0222 Vvi-Chr8 4661781 4666963 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0222 27 78 C3H Transcription Factor Family AT4G00335 44.231 7.78e-11 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0222 K19043 - vvi:100242721 743.036