Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0213 ATGGACAGGGACCAAAGCCAAGTTGTTACAACCTTGAGAGGAACTCCAGGATATTTGGCTCATGAATGGCTGAGCTCCGCCATCACAGAGAAAGTGGACGTCTACAGCTTTGGTATTGTGACTTTGGAAATTTTGTGTGGGCGAAGAAATTTGGATCACTCTCAGCCCGAGGAGGATAAACATTTGTTACGTCTTTTTAAGAAAAAGGCTGAGGAAGATCAGATGTTGGATTTGGTTGATAAGTACAGTGAGGACATGCAGTTACATGGAGCAGAAGCTGTGGAGATGATGAGGCTTGCTGCATGGTAG 309 0.4498 MDRDQSQVVTTLRGTPGYLAHEWLSSAITEKVDVYSFGIVTLEILCGRRNLDHSQPEEDKHLLRLFKKKAEEDQMLDLVDKYSEDMQLHGAEAVEMMRLAAW* 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0213 102 SUPERFAMILY Protein kinase-like (PK-like) 7 80 IPR011009 -
Vvi8g0213 102 ProSiteProfiles Protein kinase domain profile. 1 102 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g0213 102 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 1 102 - -
Vvi8g0213 102 Gene3D Transferase(Phosphotransferase) domain 1 1 102 - -
Vvi8g0213 102 Pfam Protein kinase domain 6 77 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0213 Vvi-Chr8 4417728 4418036 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0213 2 82 Receptor kinase-like Gene Family AT2G39360 41.463 1.04e-15 69.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vvi8g0213 Pkinase 4.1e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0213 - - vvi:100254081 192.586