Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0210 ATGCCAACTAGATTCTCTCACGAAATCTTGGTAGTTGCCACTGAAAATTTTAGTTGGGAGCTTGGGAAAGGAGGATTTGGTTCAGTCTTTGAAGGGATTCTGACAGATGGAACAAAAGTTGCTGTGAAGTGTATCAATGGTTTATCTCAGACAAAGGATTCTTTCTTAGCTGAGGTTGAGACCATAGGCCGCATTCACCATTTGAACTTGGTGAGACTGGTTGGTCTTTTTAAGAGAAAGGCTAAGGAAGATCAGATGTTGGATTTGGTTGATAAGTGCAGTGAGGATATGCAGTTACATGGAGCAGAAGCTGTAGAGATGTTGAGGCTTGATGCATGGTGTCTACAAAATTATACTGGTAGAAGGCCTTCTATGTCAATGGTGATCAAGGTCTTGGAGGGGTTGATCGATGTTGAAGATAATCTGGACTACAATTTCTTTAATTCATCAGAACTAGAAGCCACTGAAGCAGTTCACCGGGGGGAGATTAATGTGGGTTTTGCCTCTCCCAAGTTGCCGTCCATTCTGTCAGGACCCAGGTGA 543 0.4309 MPTRFSHEILVVATENFSWELGKGGFGSVFEGILTDGTKVAVKCINGLSQTKDSFLAEVETIGRIHHLNLVRLVGLFKRKAKEDQMLDLVDKCSEDMQLHGAEAVEMLRLDAWCLQNYTGRRPSMSMVIKVLEGLIDVEDNLDYNFFNSSELEATEAVHRGEINVGFASPKLPSILSGPR* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0210 180 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 1 79 - -
Vvi8g0210 180 Gene3D Phosphorylase Kinase; domain 1 1 87 - -
Vvi8g0210 180 SUPERFAMILY Protein kinase-like (PK-like) 3 81 IPR011009 -
Vvi8g0210 180 Pfam Protein tyrosine and serine/threonine kinase 19 82 IPR001245 GO:0004672|GO:0006468
Vvi8g0210 180 ProSiteProfiles Protein kinase domain profile. 15 180 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g0210 180 ProSitePatterns Protein kinases ATP-binding region signature. 21 43 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0210 Vvi-Chr8 4388885 4389851 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0210 2 80 Receptor kinase-like Gene Family AT1G15530 48.780 2.20e-17 77.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vvi8g0210 PK_Tyr_Ser-Thr 2.4e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0210 - - vri:117920240 325.479