Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0208 ATGGAGAGACCGAATTCGTCGTCAGGAATAATGAGGACGAAGTCGGACCAACTGGTGGAGACGGCAGAAGCGGTGGCGGCTGCGATGAGATCCCCGACGTCGGGGGAGGCTACGGGAGGGGCGGAGAGCGGTGGAACGCTGTCGAGGAAGTCGAGCAGACGGAGCATGATGTCTGCGTCGCCGGGACGTGCGGGTGGCAACAGCAAAAACACTCACATTAGGAAGTCGAGGAGCGCCCAAATTAAGCTGGACTTGGATGAAGTCAGCAGCGGCGCGGCGCTCAGTCGAGCCTCTAGCGCCAGCTTGGGCTTCTCCTTCTCCTTCACTGGCTTCACCGTGCCTCCCGACGAAATCTCTGATTTTAAGCCGTTCAGTGATGATGATACTCCTGATGATCTTGAAGCCGGAATGCGGAAGCAGAGGATTCAAGCAGAGCCCACATTGCCAATTTACCTCAAGTTCAAGGATGTTACCTACAAGGTGATTCTCAAAGGAATGAGGACTAATGTGGAGAAGGAAATCTTGAATGGGATTACTGGTTCAGTTAATCCAGGAGAAGTTTTGGCGCTGATGGGGCCTTCAGGAAGTGGAAAGACAACTCTACTAAATTTGCTTGGTGGCAGGTTGAATCAGCCCACCGCAGGTGGTTCAGTTACTTACAATGACCAGCCATATTCTAAGTCCCTAAAGAGCAAGATAGGGTTCGTGACTCAAGATGATGTTTTATTTCCTCACCTTACAGTGAGAGAAACATTAACATATGCAGCTCGGCTACGGCTGCCAAAGACATTGACCAAACAGCAAAAGGAAAAACGAGCCGTGGATGTCATCTATGAGCTAGGCTTGGACAGGTGCCAAGATACGATGATTGGAGGTTCCTTTGTTCGGGGAGTTTCTGGGGGAGAAAGAAAGAGAGTGAGTATCGGCAATGAGATTATAATAAATCCTTCACTTCTGTTTCTTGATGAACCGACATCTGGCTTGGATTCTACGACTGCTTTGAGGATTGTTCAGATGTTGCATGATATAGCTGAGGCTGGAAAAACAGTGCTAACAACAATCCATCAACCATCCAGCAGACTCTTCCACAAATTTGACAAATTGATTCTTCTTGGGAAAGGAAACTTGCTCTACTTTGGGAAGGCATCAGGAACAATGGAGTATTTCTCATCCATAGGCTGCTCTCCTCTCATTACAATGAACCCTGCAGAGTTCCTGCTAGATCTTGCAAATGGAAACCTAAATGATGTCTCTATACCATCAGAATTAGAAGATAAAGTACAAACAGAGCATTCAGAAACTGAAACAAGGAATGGAAAGCCATCACCTGCAGATGTGCATGAGTACCTTGTGGAGGCCTATGAGACACGGGTTGCAGACCAGGAGAAGAAGAAACTTATGATTCCAATTCCCATTGATGAGGAGCTCAAGTCAAAAGTCTGTTCTCCAAAGCGAGAATGGGGAGCAAGCTGGTGGGAACAATACTCTATATTATTCCGGAGAGGACTGAAAGAACGGCGGCATGACTATTTCAGCTGGTTAAGGGTCACCCAAGTTGCATCAACTGCAACTATCTTGGGATTGCTCTGGTGGCAATCAGAAAGTACTAACCCCAAAGGCCTGCAAGATCAGGCAGGGCTGCTTTTCTTTATTGCTGTGTTCTGGGGCTTCTTTCCTGTCTTCACAGCAATTTTCACATTTCCTCAAGAAAGGGCCATGCTGAGCAAGGAACGAGCAGCTGACATGTATAGACTAAGTGCATATTTCGTGGCTAGGACTACAAGTGACCTTCCACTTGACCTCATATTACCAGTACTTTTCCTTATCATTGTATACTTCATGGCAGGCCTGAGAATGGATGCTGGTTCTTTTTTCCTAACCATGCTCACAGTTTTCCTCTGCATTGTAGCGGCTCAGGGACTTGGGCTAGCTATTGGAGCCACACTAATGGACTTAAAGAGGGCAACAACTTTGGCTTCAGTAACTGTGATGACCTTCATGTTGGCTGGTGGATATTTTGTGAAGAAAGTTCCAATATTCATATCATGGATCCGCTACATCTCTTTCAACTACCACACCTACAAACTTCTTCTCAAGGTGCAGTATGAACACATTACACCTAATGTAAATGGCATGAAAATTGACGGCGGTTTGAAGGAAGTCAGTGCACTCGTAGCCATGGTTTTTGGCTACAGACTCTTAGCATACATCTCTTTGCGGAGGATGAAACTCCACACTGGAGCATAA 2247 0.4668 MERPNSSSGIMRTKSDQLVETAEAVAAAMRSPTSGEATGGAESGGTLSRKSSRRSMMSASPGRAGGNSKNTHIRKSRSAQIKLDLDEVSSGAALSRASSASLGFSFSFTGFTVPPDEISDFKPFSDDDTPDDLEAGMRKQRIQAEPTLPIYLKFKDVTYKVILKGMRTNVEKEILNGITGSVNPGEVLALMGPSGSGKTTLLNLLGGRLNQPTAGGSVTYNDQPYSKSLKSKIGFVTQDDVLFPHLTVRETLTYAARLRLPKTLTKQQKEKRAVDVIYELGLDRCQDTMIGGSFVRGVSGGERKRVSIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLHDIAEAGKTVLTTIHQPSSRLFHKFDKLILLGKGNLLYFGKASGTMEYFSSIGCSPLITMNPAEFLLDLANGNLNDVSIPSELEDKVQTEHSETETRNGKPSPADVHEYLVEAYETRVADQEKKKLMIPIPIDEELKSKVCSPKREWGASWWEQYSILFRRGLKERRHDYFSWLRVTQVASTATILGLLWWQSESTNPKGLQDQAGLLFFIAVFWGFFPVFTAIFTFPQERAMLSKERAADMYRLSAYFVARTTSDLPLDLILPVLFLIIVYFMAGLRMDAGSFFLTMLTVFLCIVAAQGLGLAIGATLMDLKRATTLASVTVMTFMLAGGYFVKKVPIFISWIRYISFNYHTYKLLLKVQYEHITPNVNGMKIDGGLKEVSALVAMVFGYRLLAYISLRRMKLHTGA* 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0208 748 MobiDBLite consensus disorder prediction 1 15 - -
Vvi8g0208 748 ProSitePatterns ABC transporters family signature. 298 312 IPR017871 GO:0005524|GO:0016887
Vvi8g0208 748 Pfam ABC transporter 175 326 IPR003439 GO:0005524
Vvi8g0208 748 MobiDBLite consensus disorder prediction 36 74 - -
Vvi8g0208 748 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 152 389 IPR027417 -
Vvi8g0208 748 Pfam ABC-2 type transporter 493 702 IPR013525 GO:0016020|GO:0140359
Vvi8g0208 748 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 101 736 - -
Vvi8g0208 748 MobiDBLite consensus disorder prediction 1 76 - -
Vvi8g0208 748 Gene3D - 151 392 IPR027417 -
Vvi8g0208 748 CDD ABCG_EPDR 149 380 - -
Vvi8g0208 748 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 152 398 IPR003439 GO:0005524
Vvi8g0208 748 Pfam ABC-2 type transporter 355 459 IPR043926 GO:0140359
Vvi8g0208 748 SMART AAA_5 184 375 IPR003593 GO:0016887
Vvi8g0208 748 FunFam ABC transporter G family member 22 162 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0208 Vvi-Chr8 4360765 4369408 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0208 173 380 Calmodulin-binding Proteins AT2G36910 30.047 1.38e-14 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0208 K05681 - vvi:100240995 1395.95