Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0207 ATGGGGAACACATGTGTAGGACCAAATCTTGCGGCCAATGGTTTTTTGCAATCGGTCTCCGCCGCGGTTTGGCGAACCCGGCCGCCGGAGGACATGCTTCCGCCTCCCAATGCCGACGGAAGCAGCAGTGGGGACAATGCAGGTTCTGATGGCGCCAAAGGATCAGATCCCCCAATGCCGGTGCAGAGCACCCCGCCTGAAACCGTTAAAATCACTGCTGAGGTGCAGAAAGCCGAAAAATCTGATGGGAATTCGGGAAAGCAGAAAAAACAGACTCATATGAAGCGGCTTTCCAGTGCAGGGCTTCAAATAGATTCTGTGTTGCAGAGGAACACTGAGAATTTGAAGGAGATCTATAGTTTGGGCCGAAAGCTGGGGCAGGGGCAATTTGGAACCACGTACCTTTGCGTGGAGAAGGCGAATGGGAAAGAGTTTGCATGTAAATCGATTGCCAAGAGGAAGTTGACGACGCGGGAAGATGTGGAGGATGTTAGGAGGGAGATTCAGATTATGCACCATCTGGCAGGGCATCCCAATGTGATATCAATTGTGGGTGCTTTTGAGGATGCAGTGGCTGTTCATGTTGTTATGGAGCTTTGTGTAGGTGGGGAGCTTTTTGATAGGATTATTCAGAGGGGGCACTATACGGAGAGAAAGGCCGCCGACCTTGCAAGGGTTATAGTTGGTGTTGTGGAAGCATGCCATTCCTTAGGTGTTATGCATCGGGACTTGAAGCCCGAAAATTTTCTCTTTATCAATCAGGATGAGGATTCACCGCTTAAAACAATAGACTTTGGACTTTCCATGTTCTTTAGGCCAGGTGAAATATTCACTGAGGTGGTTGGCAGTCCCTACTATGTGGCCCCTGAAGTATTGCGGAAGCATTATGGCCCAGAATGTGATGTTTGGAGTGCTGGGGTAATCATTTACATTTTACTAAGTGGGGTTCCCCCATTCTGGGATGAAACCGAGCAAGGGATATTTGAGCAGGTTTTAAAAGGGGATCTTGACTTTGTATCGGAGCCATGGCCTTCTATATCTGATAGTGCAAAGGATTTGGTAAGAAAAATGCTTGTAAGAGACCCAAAAAAGCGTCTGACGGCCCATGAAGTTCTGTGCCACCCTTGGGTTCAGGTCAATGGTGTAGCTCCTGATAAGCCTCTTGATTCTGCTGTTCTGACTCGATTGAAGCAATTCTCTGCCATGAACAAGCTCAAGAAAATAGCCATTAGAGTCATTGCTGAGAGTTTGTCTGAAGAAGAAATTGCTGGCTTAAAAGAAATGTTCAAGATGATAGATGTCGATAATAGTGGAAATATCACTCTTGAGGAACTAAAAACTGGTTTGGAAAGGGTGGGTGCTGACCTCAAGGATTCAGAAATTATTAGGTTGATGCAAGCGGCTGATATTGACAATAGTGGCACAATAGACTATGGTGAGTTTGTGGCTGCAATGCTCCATCTAAACAAGATCGAGAAGGAGGATCATTTGTATGCAGCTTTTTCATACTTTGACAAGGATGGGAGTGGCTATATCACCCAAGATGAGCTCCAACAGGCCTGTGAACAGTTTGGTCTAGAAGCCATTCACCTAGAAGATGTTATTCGTGAAGTTGATCAGGATAATGATGGGCGCATTGATTACAGTGAATTTGTGGCCATGATGCAAGATAGAGATTTTGGCAAGAAGGGATACAAAATAACCTAA 1707 0.4605 MGNTCVGPNLAANGFLQSVSAAVWRTRPPEDMLPPPNADGSSSGDNAGSDGAKGSDPPMPVQSTPPETVKITAEVQKAEKSDGNSGKQKKQTHMKRLSSAGLQIDSVLQRNTENLKEIYSLGRKLGQGQFGTTYLCVEKANGKEFACKSIAKRKLTTREDVEDVRREIQIMHHLAGHPNVISIVGAFEDAVAVHVVMELCVGGELFDRIIQRGHYTERKAADLARVIVGVVEACHSLGVMHRDLKPENFLFINQDEDSPLKTIDFGLSMFFRPGEIFTEVVGSPYYVAPEVLRKHYGPECDVWSAGVIIYILLSGVPPFWDETEQGIFEQVLKGDLDFVSEPWPSISDSAKDLVRKMLVRDPKKRLTAHEVLCHPWVQVNGVAPDKPLDSAVLTRLKQFSAMNKLKKIAIRVIAESLSEEEIAGLKEMFKMIDVDNSGNITLEELKTGLERVGADLKDSEIIRLMQAADIDNSGTIDYGEFVAAMLHLNKIEKEDHLYAAFSYFDKDGSGYITQDELQQACEQFGLEAIHLEDVIREVDQDNDGRIDYSEFVAMMQDRDFGKKGYKIT* 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0207 568 ProSitePatterns EF-hand calcium-binding domain. 433 445 IPR018247 -
Vvi8g0207 568 SUPERFAMILY Protein kinase-like (PK-like) 119 378 IPR011009 -
Vvi8g0207 568 Gene3D Transferase(Phosphotransferase) domain 1 205 386 - -
Vvi8g0207 568 SUPERFAMILY EF-hand 417 556 IPR011992 -
Vvi8g0207 568 Pfam EF-hand domain pair 495 556 IPR002048 GO:0005509
Vvi8g0207 568 Pfam EF-hand domain pair 425 485 IPR002048 GO:0005509
Vvi8g0207 568 Gene3D - 393 486 - -
Vvi8g0207 568 MobiDBLite consensus disorder prediction 73 89 - -
Vvi8g0207 568 ProSitePatterns EF-hand calcium-binding domain. 469 481 IPR018247 -
Vvi8g0207 568 ProSiteProfiles EF-hand calcium-binding domain profile. 492 527 IPR002048 GO:0005509
Vvi8g0207 568 ProSiteProfiles EF-hand calcium-binding domain profile. 456 491 IPR002048 GO:0005509
Vvi8g0207 568 ProSitePatterns EF-hand calcium-binding domain. 505 517 IPR018247 -
Vvi8g0207 568 ProSiteProfiles EF-hand calcium-binding domain profile. 420 455 IPR002048 GO:0005509
Vvi8g0207 568 FunFam Calcium-dependent protein kinase 1 121 204 - -
Vvi8g0207 568 FunFam Calcium-dependent protein kinase SK5 205 389 - -
Vvi8g0207 568 Pfam Protein kinase domain 119 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g0207 568 CDD STKc_CAMK 119 376 - -
Vvi8g0207 568 SMART efh_1 460 488 IPR002048 GO:0005509
Vvi8g0207 568 SMART efh_1 424 452 IPR002048 GO:0005509
Vvi8g0207 568 SMART efh_1 530 558 IPR002048 GO:0005509
Vvi8g0207 568 SMART efh_1 496 524 IPR002048 GO:0005509
Vvi8g0207 568 ProSitePatterns Protein kinases ATP-binding region signature. 125 152 IPR017441 GO:0005524
Vvi8g0207 568 ProSitePatterns EF-hand calcium-binding domain. 539 551 IPR018247 -
Vvi8g0207 568 PANTHER SERINE/THREONINE-PROTEIN KINASE 106 551 - -
Vvi8g0207 568 ProSitePatterns Serine/Threonine protein kinases active-site signature. 239 251 IPR008271 GO:0004672|GO:0006468
Vvi8g0207 568 Gene3D - 403 555 - -
Vvi8g0207 568 SMART serkin_6 119 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g0207 568 ProSiteProfiles Protein kinase domain profile. 119 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g0207 568 Gene3D Phosphorylase Kinase; domain 1 121 204 - -
Vvi8g0207 568 MobiDBLite consensus disorder prediction 26 98 - -
Vvi8g0207 568 ProSiteProfiles EF-hand calcium-binding domain profile. 530 561 IPR002048 GO:0005509
Vvi8g0207 568 FunFam Calcium-dependent protein kinase 1 385 559 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0207 Vvi-Chr8 4329896 4341046 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0207 1 568 EF-hand Containing Proteins AT2G38910 75.085 0.0 921
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vvi8g0207 Pkinase 8.8e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0207 K13412 - vvi:100246254 1124.38