Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0202 ATGCCTCTCTGCAGGGACTTGCTGTTTCAAACAAGGAAGAAGAGAAAGAAAAGCAAGAAATCCACTCTCACAAAACACAACTCGACTTCTTTGAAGCAACAATTATCACCCCAACATCAACAACAACCACAGGAAGAAGATACAGAAGAGGGGTTCAGCCTAAGGGCCTCTGCTCCATCACACAAATATGGGGTCCAGCCACTGGGCAATCTCTACTTCAGCCCATCCTCCTTTAACTCCAGGAACTCAGGCCTTGGTGCTCTCCAAATCCTCACAGATGAGCTTGTCCTTGAAATTCTGGGGTTTTTGGATGGTGCCCATTTGGGTGTTTTGGCTACTGTGAGCAAATCTTTCTATGTTTTCACCAACCATGAACCCCTTTGGAGGAACCTTGTTTTGGATAATCTAGTTGGTGGGTTTTTGTATAATGGGTCTTGGAAATCTACTTATGTAGCTGCTTTTTATCCTTCTTTTGCTTGTGCTGGTTCTTTGGTTTTGAATGTTAGGGACTTTTATTCTGATTATCTGTTCCAAAGCTGGCTCTGTGCTAATCTTGAAATGAAATCTGAATGGCTTGAAAGGGATAACATAACGCGAAGGAAGGGCATTTCGATTGAAGACTTTGTGTTGAATTTTGAGGAACCCAATAGGCCAGTGTTACTAGAAGGATGTTTGGATAATTGGGTTGCATTGGAAAAATGGAATAGAAATTATTTGATTGAAACATGTGGAGATGTTAAATTTTCGGTTGGACCAGTGGAGATGAAGCTTGAGGATTATTTTAGGTACTCGGATTTGGTAAGGGAAGAGAGGCCATTGTATCTTTTTGACCCGAAGTTTGGGGAGAAGGTTCCAAAATTGGGTTTGGAGTATGATGTTCCAGTGTACTTTAAAGAGGACTTGTTTAGTGTTTTGGGTAATGAAAGACCAGATTATAGGTGGATTATAATTGGACCTGCAGGTTCTGGTTCATCTTTCCATATTGATCCTAATTCTACTTCAGCTTGGAATGCAGTGATCAAGGGATCCAAGAAATGGGTATTGTTTCCCCCTGAAGTAGTTCCTCCTGGGGTGCATCCAAGCCCTGATGGTGCAGAAGTGGCATGTCCTGTTTCAATAGTTGAGTGGTTCATGAACTTCTATGGAGCAACAAAGAAATGGAAAAAGAAACCAATTGAGTGTGTTTGTAAGGCTGGGGAGGTGATATTTGTGCCTAATGGATGGTGGCATTTGGTGATCAACCTAGAAGATTCCATTGCCATTACCCAAAATTTTGTTAGTAGGAGGAACTTGTTGAACGTATTGGATTTTCTCAAGAAACCAAATGCTAGCATGCTTGTATCTGGAACAAGGGACCGGGTGAATTTGTACGAAAAGTTTAGGAAGGCTATTGAGGCTACTTTCCCTGGAACTATTGATCAGTTGATGTCAAAGGCTGAGGAAAAGAAATCTCAACCGAAGAAGCTGACCTTTTGGGAATCTGTATCAGATTCCAATGTGGGTGCTTTCAAGTTTTCATTTTAA 1524 0.4147 MPLCRDLLFQTRKKRKKSKKSTLTKHNSTSLKQQLSPQHQQQPQEEDTEEGFSLRASAPSHKYGVQPLGNLYFSPSSFNSRNSGLGALQILTDELVLEILGFLDGAHLGVLATVSKSFYVFTNHEPLWRNLVLDNLVGGFLYNGSWKSTYVAAFYPSFACAGSLVLNVRDFYSDYLFQSWLCANLEMKSEWLERDNITRRKGISIEDFVLNFEEPNRPVLLEGCLDNWVALEKWNRNYLIETCGDVKFSVGPVEMKLEDYFRYSDLVREERPLYLFDPKFGEKVPKLGLEYDVPVYFKEDLFSVLGNERPDYRWIIIGPAGSGSSFHIDPNSTSAWNAVIKGSKKWVLFPPEVVPPGVHPSPDGAEVACPVSIVEWFMNFYGATKKWKKKPIECVCKAGEVIFVPNGWWHLVINLEDSIAITQNFVSRRNLLNVLDFLKKPNASMLVSGTRDRVNLYEKFRKAIEATFPGTIDQLMSKAEEKKSQPKKLTFWESVSDSNVGAFKFSF* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0202 507 SUPERFAMILY F-box domain 79 152 IPR036047 GO:0005515
Vvi8g0202 507 MobiDBLite consensus disorder prediction 24 42 - -
Vvi8g0202 507 Gene3D Cupin 176 427 - -
Vvi8g0202 507 Pfam Cupin-like domain 210 425 IPR041667 -
Vvi8g0202 507 MobiDBLite consensus disorder prediction 12 53 - -
Vvi8g0202 507 Gene3D - 80 156 - -
Vvi8g0202 507 SMART cupin_9 273 442 IPR003347 -
Vvi8g0202 507 FunFam F-box protein At1g78280 177 427 - -
Vvi8g0202 507 ProSiteProfiles JmjC domain profile. 282 442 IPR003347 -
Vvi8g0202 507 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 85 505 - -
Vvi8g0202 507 SUPERFAMILY Clavaminate synthase-like 195 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0202 Vvi-Chr8 4253720 4259617 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0202 79 431 Glycosyltransferase AT1G78280 38.275 1.97e-76 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vvi8g0202 Cupin_8 3.8e-22 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0202 - - vvi:100251232 999.579