Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0174 ATGAATGACCTTTTATCGGAATCTTTTGAGATCCCTCGGGGTCAAGCTTCTAGAGAGGGAGATATTGAATTAGGAGAACGTGCTCTACAAAATTCAGGGGAACTGGGATTGGAAAATTTCTTCAAGAAGGTTCAGGAGATTGAGAAACAAAATGACAAGCTGAACGTGCAACTCAAAAAACTCCAGGATGCACACGAGGAGTCAAAGGCTGTAACCAAGGCTGCTGCCATGAAAGCAATTAAAAAGCGAATGGAGAAAGATGTTGATGAAGTTGGAAAAATTGCCCGTTCTATAAAAGCCAAAGTTGAAGAACTTGACAAAGAGAATTTAGCCAATAGGCAGAAGCCTGGATGTGGAAAAGGAACAGGTGTAGATCGATCAAGAACTGCAACAACTGTTGCCTTGAAAAAGAAGTTCAAAGACAAGATGGCTGAATTTCAGGTCCTAAGAGAATCCATCCATCAAGAATATCGGGAGGTGGTGGAAAGGCGTGTTTTTACAGTGACTGGCACAAGAGCTGATGAGGAGACAATTGACAGATTAATTGAGACTGGAGACAGTGAACAAATTTTCCAGAAAGCAATTCAGGAACAAGGACGAGGCCAGATAATGGACACATTGGCTGAAATTCAAGAGCGACATGATGCAGTTAGAGAAGTAGAGAGGAAGCTTCTTGATCTACAGCAGATATTCTTAGATATGGCGGTGTTGGTAGATGCACAGGGGGACATGCTTGACAATATAGAATCACAGGTGTCTAGTGCAGTAGACCATGTGCAGTCGGGTAACACTGCCCTCCAAAGGGCCAAGAAGCTACAAAGGAGCTCGAGAAAATGGATGTGCATTGCCATCATCATCCTTCTTATCATTGTGGTGATCATAGTGGTGGCAGTGCTCAAGCCTTGGAGCAAGAATGGTGCTTAG 924 0.434 MNDLLSESFEIPRGQASREGDIELGERALQNSGELGLENFFKKVQEIEKQNDKLNVQLKKLQDAHEESKAVTKAAAMKAIKKRMEKDVDEVGKIARSIKAKVEELDKENLANRQKPGCGKGTGVDRSRTATTVALKKKFKDKMAEFQVLRESIHQEYREVVERRVFTVTGTRADEETIDRLIETGDSEQIFQKAIQEQGRGQIMDTLAEIQERHDAVREVERKLLDLQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQRAKKLQRSSRKWMCIAIIILLIIVVIIVVAVLKPWSKNGA* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0174 307 FunFam Syntaxin 132 32 161 - -
Vvi8g0174 307 SMART SynN_4 32 158 IPR006011 GO:0016020
Vvi8g0174 307 FunFam Syntaxin 132 200 300 - -
Vvi8g0174 307 CDD SNARE_syntaxin1-like 206 268 - -
Vvi8g0174 307 ProSitePatterns Syntaxin / epimorphin family signature. 213 252 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vvi8g0174 307 CDD SynN 37 194 IPR006011 GO:0016020
Vvi8g0174 307 SMART tSNARE_6 202 269 IPR000727 -
Vvi8g0174 307 Gene3D - 34 161 - -
Vvi8g0174 307 PANTHER SYNTAXIN 34 289 IPR045242 -
Vvi8g0174 307 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 207 269 IPR000727 -
Vvi8g0174 307 Pfam Syntaxin 39 242 IPR006011 GO:0016020
Vvi8g0174 307 Coils Coil 37 71 - -
Vvi8g0174 307 Gene3D - 198 300 - -
Vvi8g0174 307 Pfam SNARE domain 243 295 IPR000727 -
Vvi8g0174 307 SUPERFAMILY t-snare proteins 36 262 IPR010989 GO:0016020|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0174 Vvi-Chr8 3554373 3576773 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0174 1 307 SNARE and Associated Proteins AT3G03800 75.974 3.35e-161 449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0174 K08486 - vvi:100265088 553.903