Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0150 ATGGCCAAAGTGTTTCTTCATTATGAACCCTCAACACCTATGGAAATTTATAGGTTCCTTTTCAATTTGGCTAAGATTGGACGTTGCCAATTTGCATCACTGCAGGCTCAGTTGATGACAAAAATTCATCACAGGAACTTGGTTCCCCTCATTGGATACTACAATGAAAGACAACACTTGGGGCTTGTATACGAGTATATGACTAATGGAAACTTGCAAGAGTATTTGTCAACTACAAATACTGCTGTCTTGAGTTGGGATCACAGACTTCGAATAGTAGTTGATACAGCACAAGCATTAGAGTATTTACATAATGGTTGCAAGCTACCTATAATCCACAAAGATGTCAAGACTTCCAACATTTTGTTGGATGAGAAACTGCAAGCAAAAGTTACTTATTTCAGGTTGTCCAGAATCATGCCAGATGAAAATGGCAGCCATGCATCAACTGCAGTTGTAGGCAGAGTCGGGTACCTCGATCTTGAGTATTTCAGATTGAATAAGTTGAATAAAAAATGGACTGATCGGAGAGGGGTGGCGTGGATCAGAGGAGAGAGATGTATCAGTGACTGTCCATCGCAAGCTTTTCTTGCAAGAATATTCTTCTGCACTTTCCACCCTCTATCCACATTATATGTTCTAATATGGCTTTTGTGA 657 0.3988 MAKVFLHYEPSTPMEIYRFLFNLAKIGRCQFASLQAQLMTKIHHRNLVPLIGYYNERQHLGLVYEYMTNGNLQEYLSTTNTAVLSWDHRLRIVVDTAQALEYLHNGCKLPIIHKDVKTSNILLDEKLQAKVTYFRLSRIMPDENGSHASTAVVGRVGYLDLEYFRLNKLNKKWTDRRGVAWIRGERCISDCPSQAFLARIFFCTFHPLSTLYVLIWLL* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0150 218 ProSitePatterns Serine/Threonine protein kinases active-site signature. 111 123 IPR008271 GO:0004672|GO:0006468
Vvi8g0150 218 ProSiteProfiles Protein kinase domain profile. 1 218 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g0150 218 Gene3D Transferase(Phosphotransferase) domain 1 68 175 - -
Vvi8g0150 218 PANTHER OS07G0107800 PROTEIN-RELATED 33 172 - -
Vvi8g0150 218 SMART serkin_6 20 202 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g0150 218 Pfam Protein tyrosine and serine/threonine kinase 33 170 IPR001245 GO:0004672|GO:0006468
Vvi8g0150 218 SUPERFAMILY Protein kinase-like (PK-like) 33 172 IPR011009 -
Vvi8g0150 218 Gene3D Phosphorylase Kinase; domain 1 22 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0150 Vvi-Chr8 3104429 3105085 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0150 34 172 Receptor kinase-like Gene Family AT4G29180 51.799 2.80e-48 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Vvi8g0150 PK_Tyr_Ser-Thr 7.5e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0150 - - vvi:100242932 185.267