Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0149 ATGCCTCCCAAGACAGGGCCTCGCCCTAGAAGAGGACCTAGGGTTACCGCCCGGAAAAGCGTCCCTCCTTCCAACCCCGCTCCAGATGATTCCGTACATCCTCCGGCCCCGACCGCCGCCACTGCCGCCACCTCCGCCACTACTATTTCTACCACCGCCCCTGCTTCTGAAAGTGAAACCACCGTCCCTTCTTTAACCTCCTCGGCTGAAGCCAATTCCTTTGAAACTCCAACAGCTCCAGAAGCCACCCCTCAATCTGGAACTGGAACTGAAAACGAAAATGAAACGATAATTGTGCCTCAATTGGTGGAGCCTTCGCCTGAAGTCAATGAAGAAAGTGATGCTCCTCCATTGACCTCTCCTCCGCCGGCCAAGAAGACGGTCAGGGTTGTGAAAAAGAAGGTGGTCAGAAAAATGGTTACCAGAAGAGTGGAAAAGGGTTTGGTTGGGTCTTCCACTACACAGTCGGAGGCAAAACCTAGTCCTAATTCTGATCCTGCCGTATCTGCTGCAATGGAGGGGGTGGTTGTTTCGGGTTTGGCTGAGGAAGTTGAAAACCCTAAACCTCCCTTGGATGGGGTGGTGATTTCGGGCTTGGATCATGAAATTGAAAAGCCTAGCCCTCCCATTTCTGTTACAATGGAGGGAGTCGCTGTTTTGGGTTCGGCAGATGAAGTTGAAAAACCTAACCCTAACCCAAAGATTCTGTCTGAAGCTGCGGCTGTGATTCCGACGGAAGGTCTTGTATCGACTTTGGTAGAGGATACCATTGAAAACCCCCGTATTTCTGCTATGGAAGATGTAAATGTGGATTCAATTAAAGATCAGAAGGGCGAATCAGAGAATGAAAATATGAATCCCCAGGGCGAAATGAAGGAAGAGGTGGAGAATTGTGATGGAGGTGGTACCAAGGAAGTGGCTGAGGTGGAGGATAGCATGGCAGTCCTGAGCGAGGAAATGGAGGCATTAGAGAGGCAGAAGAGGAGGAAAACTGAGATCTTTATTGGTGGGTTGGACAAGAGTGCCAGGGAGGAAGACATTAGGAAAGTTTTTGAGGAAGTGGGTGAGGTTTTGGAAGTGAGGCTGATGATGAATAGTAAGACGGGGAAGAACAAGGGGTATGCATTTCTGCGGTTTGCTTTAGCATCTGATGCTAAAAGGGCTCTGGCAAAATACCCAAAAATTGAGATTTGCGGAAAGCAGTGTGGAACAGCACCTGTTGAGGGCAACGACACGATATTTCTTGGTAATATTGACAAAAACTGGAAGAATGAAGATGTTGTTAAACTGTTGCAGGAGATTGGAATAGATAAAATTGATAAAGTTACCGTTATGGTTGATCCTAGCAACATTGAACGGAACCGTGGTTTTGCATTTCTAGAACTTGAAACTAACAAAGATGCTCAATTAGCATACAAGAAACTTCAAAAGAAGGACGTCTTTGGGAAGCACCAGAACATTAAAGTTGCTTGGGCCGAACCCTTGAATGAGCCAGATGAAGACGAGATGCTGAAGGTGAAAACAGTTTATGCAGAATACATACCTTCTTCGTGGGAGGAAGAGAAAGTGCGTGATTGTTTCAAAAAGTTTGGGGAGATTGAAAGTGTTGTTCTTGCTCGAAATCTACGCTCATCTAAGAGGAAAGACTTCGCATTTGTTAAGTATACAACCCGTGAGGCTGCTCTAGAGTGCATTGAGTCGTTTAGTCGGGAGCCATTGCATGATGCGGAGTGCAAGGTTAAGGTGAAGGTATCTCTTGCAAAACCCATACCAAAGGGCAAGCAAATCAAGCGAGTCTCAGATCCTCTTAGCAAGGACATCTCCAATCAGAAGCCAAAGGCAACTAAACGTGATATAAAGCCGAATAACCCCAGAAACAAGGGAAAATCTATAGGAAATACTTATGAAGAAAAAAATGTTGTAGGACGGTCTTCTACAAATGCTGAACTTGTACAGCTCTTGAGGGAGCAGGCTTCATGGAGGCAGCCACAAAGAGGATTAGGTGGAGCATCTGTTAATCTGGAGTATCCTTACTCTCTACCTGGAAGCAAGCGTCCGTATGTTGCATTGGGAGATGATCCACTTTATTCAGACCCGAGAGTGCGTCCTCGCACACACTTAGAAAGTTCTTTTCCAGTTGCAAGCCCAGGTTACACTGCAATTTCCCAAGGTGTTGGTATGACATCTCTTTCCTATCATGAGCGTCAAGGTGCTCGTTATACATCAGGATATGCATACTTGGATCTTCCAACTGGTTTCCAGAGAGAAGGAGCTTCTTACCATGGGAGCAATGGTCTATATGGTCGATATTGA 2313 0.4635 MPPKTGPRPRRGPRVTARKSVPPSNPAPDDSVHPPAPTAATAATSATTISTTAPASESETTVPSLTSSAEANSFETPTAPEATPQSGTGTENENETIIVPQLVEPSPEVNEESDAPPLTSPPPAKKTVRVVKKKVVRKMVTRRVEKGLVGSSTTQSEAKPSPNSDPAVSAAMEGVVVSGLAEEVENPKPPLDGVVISGLDHEIEKPSPPISVTMEGVAVLGSADEVEKPNPNPKILSEAAAVIPTEGLVSTLVEDTIENPRISAMEDVNVDSIKDQKGESENENMNPQGEMKEEVENCDGGGTKEVAEVEDSMAVLSEEMEALERQKRRKTEIFIGGLDKSAREEDIRKVFEEVGEVLEVRLMMNSKTGKNKGYAFLRFALASDAKRALAKYPKIEICGKQCGTAPVEGNDTIFLGNIDKNWKNEDVVKLLQEIGIDKIDKVTVMVDPSNIERNRGFAFLELETNKDAQLAYKKLQKKDVFGKHQNIKVAWAEPLNEPDEDEMLKVKTVYAEYIPSSWEEEKVRDCFKKFGEIESVVLARNLRSSKRKDFAFVKYTTREAALECIESFSREPLHDAECKVKVKVSLAKPIPKGKQIKRVSDPLSKDISNQKPKATKRDIKPNNPRNKGKSIGNTYEEKNVVGRSSTNAELVQLLREQASWRQPQRGLGGASVNLEYPYSLPGSKRPYVALGDDPLYSDPRVRPRTHLESSFPVASPGYTAISQGVGMTSLSYHERQGARYTSGYAYLDLPTGFQREGASYHGSNGLYGRY* 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0149 770 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 83 742 - -
Vvi8g0149 770 SUPERFAMILY RNA-binding domain, RBD 501 590 IPR035979 GO:0003676
Vvi8g0149 770 MobiDBLite consensus disorder prediction 38 99 - -
Vvi8g0149 770 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 411 494 IPR000504 GO:0003723
Vvi8g0149 770 CDD RRM_SF 514 581 - -
Vvi8g0149 770 Gene3D - 262 408 IPR012677 -
Vvi8g0149 770 MobiDBLite consensus disorder prediction 276 299 - -
Vvi8g0149 770 MobiDBLite consensus disorder prediction 1 169 - -
Vvi8g0149 770 FunFam Predicted protein 270 410 - -
Vvi8g0149 770 Coils Coil 306 333 - -
Vvi8g0149 770 SUPERFAMILY RNA-binding domain, RBD 324 402 IPR035979 GO:0003676
Vvi8g0149 770 MobiDBLite consensus disorder prediction 610 624 - -
Vvi8g0149 770 Gene3D - 494 633 IPR012677 -
Vvi8g0149 770 SMART rrm1_1 412 488 IPR000504 GO:0003723
Vvi8g0149 770 SMART rrm1_1 332 405 IPR000504 GO:0003723
Vvi8g0149 770 SMART rrm1_1 508 581 IPR000504 GO:0003723
Vvi8g0149 770 MobiDBLite consensus disorder prediction 595 639 - -
Vvi8g0149 770 CDD RRM_SF 413 489 - -
Vvi8g0149 770 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 512 576 IPR000504 GO:0003723
Vvi8g0149 770 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 333 401 IPR000504 GO:0003723
Vvi8g0149 770 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 413 483 IPR000504 GO:0003723
Vvi8g0149 770 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 331 401 IPR000504 GO:0003723
Vvi8g0149 770 SUPERFAMILY RNA-binding domain, RBD 409 496 IPR035979 GO:0003676
Vvi8g0149 770 Gene3D - 410 493 IPR012677 -
Vvi8g0149 770 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 507 589 IPR000504 GO:0003723
Vvi8g0149 770 MobiDBLite consensus disorder prediction 147 163 - -
Vvi8g0149 770 CDD RRM_SF 333 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0149 Vvi-Chr8 3049004 3072161 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0149 408 597 Eukaryotic Initiation Factors Gene Family AT1G49760 22.632 1.10e-06 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0149 - - vvi:100254786 1451.03