Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0146 ATGTTGTGGGTGGACAAGTACAGGCCTAAAACCCTTGACAATCTCATCGTCCACGATGATGTCGCTCAAAATCTGAAGAAACTGGTTACTGAGCAGGATTGCCCCCATTTGCTGTTCTACGGCCCACCCGGATCGGGCAAGAAAACCCTAATCATGGCCATTCTCAGACAGATGTTCGGACCCAGCGCTGACAAGGTGAAGGTAGAGAACAAGACATGGAAAATTGATGCTGGAACGAGAACTATTGATCTGGAGCTTACAACATTATCAAGCACACATCACATGGAACTGAATCCGGGGGATGCAGGCTTTCAGGATAGATACATTGTTCAAGAGATAATTAAAGAAATGGCAAAGAATAGACCAATTGACACAAAAGGAAAGAAGGGGTTTAGAGTATTGGTGCTCAATGAGGTTGACAGACTTTCAAGAGAAGCCCAGCATTCCCTTCGAAGAACAATGGAGAAGTATAGTGCATCATGCCGATTAATTCTATGTTGCAACAGTTCTTCAAAGGTTACGGAAGCAGTTCGGTCTCGCTGTCTAAACATCCGAATAAATGCACCAACAGAAGAGCAGATTACTAAGGTGTTAGAGTTCATTGCTAAGAAAGAAGGGCTGCAACTTCCATCTGGATTTGCTACCCGCATTGCAGAAAAATCAAATCGGAGTTTAAGGAGGGCTATACTATCTTTTGAGACTTGTCGTGTCCAACAGTATCCTTTTACAAATAACCAAGCAATGCCCCCTATGGATTGGGAGGAATATGTTTCTGAAATAGCATCTGACATAATGAAGGAGCAGAGCCCCAAAAGGCTGTTTCAAGTCCGAGGAAAACTGTATGAACTACTCATCAATTGCATTCCTCCAGAAATCATTTTAAAGAGGCTGCTTTTGGAACTATTGAAGAAACTGGATGCCGAACTAAAGCATGAGGTCTGCCATTGGGCTGCATACTATGAGCATAGGATGCGACTTGGACAGAAAGCAATATTTCACATCGAAGCATTTGTGGCCAAGTTCATGAGCATTTATAAGGCTTTCCTCATTGCAACTTTTGGCTGA 1065 0.431 MLWVDKYRPKTLDNLIVHDDVAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMAILRQMFGPSADKVKVENKTWKIDAGTRTIDLELTTLSSTHHMELNPGDAGFQDRYIVQEIIKEMAKNRPIDTKGKKGFRVLVLNEVDRLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAVRSRCLNIRINAPTEEQITKVLEFIAKKEGLQLPSGFATRIAEKSNRSLRRAILSFETCRVQQYPFTNNQAMPPMDWEEYVSEIASDIMKEQSPKRLFQVRGKLYELLINCIPPEIILKRLLLELLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKAFLIATFG* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0146 354 FunFam Replication factor C subunit 5 1 189 - -
Vvi8g0146 354 Gene3D - 252 345 - -
Vvi8g0146 354 Gene3D - 190 248 - -
Vvi8g0146 354 SMART AAA_5 33 192 IPR003593 GO:0016887
Vvi8g0146 354 FunFam replication factor C subunit 3 190 248 - -
Vvi8g0146 354 Pfam DNA polymerase III, delta subunit 19 188 - -
Vvi8g0146 354 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 237 IPR027417 -
Vvi8g0146 354 CDD HLD_clamp_RFC 189 238 - -
Vvi8g0146 354 Gene3D - 1 189 IPR027417 -
Vvi8g0146 354 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 3 342 - -
Vvi8g0146 354 CDD AAA 16 189 - -
Vvi8g0146 354 FunFam Replication factor C subunit 3 252 345 - -
Vvi8g0146 354 SUPERFAMILY post-AAA+ oligomerization domain-like 251 346 IPR008921 GO:0003677|GO:0006260
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0146 Vvi-Chr8 2999196 3022014 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0146 1 354 Core DNA Replication Machinery Family AT5G27740 84.463 0.0 651
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0146 K10756 - vvi:100247946 678.707